2HYI,1OO0,2XB2,2X1G


Conserved Protein Domain Family
Mago_nashi

?
cd11295: Mago_nashi 
Click on image for an interactive view with Cn3D
Mago nashi proteins, integral members of the exon junction complex
Members of this family, which was originally identified in Drosophila and called mago nashi, are integral members of the exon junction complex (EJC). The EJC is a multiprotein complex that is deposited on spliced mRNAs after intron removal at a conserved position upstream of the exon-exon junction, and transported to the cytoplasm where it has been shown to influence translation, surveillance, and localization of the spliced mRNA. It consists of four core proteins (eIF4AIII, Barentsz [Btz], Mago, and Y14), mRNA, and ATP and is supposed to be a binding platform for more peripherally and transiently associated factors along mRNA travel. Mago and Y14 form a stable heterodimer that stabilizes the complex by inhibiting eIF4AIII's ATPase activity. In humans, but not Drosophila, EJC is involved in nonsense-mediated mRNA decay (NMD) via binding to Upf3b, a central NMD effector. EJC is stripped off the mRNA during the first round of translation and then the complex components are transported back into the nucleus and recycled. The Mago-Y14 heterodimer has been shown to interact with the cytoplasmic protein PYM, an EJC disassembly factor, and specifically binds to the karyopherin nuclear receptor importin 13.
Statistics
?
PSSM-Id: 199917
Aligned: 36 rows
Threshold Bit Score: 231.381
Created: 6-Apr-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 50 residues -Click on image for an interactive view with Cn3D
Feature 1:exon junction core complex interaction site [polypeptide binding site]
Evidence:
  • Structure:2HYI; human exon junction core complex, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1               #######  ##            #    # ### ##### # #  ### ##  #  ##               
2HYI_A         4 DFYLRYYVGHKGKFGHEFLEFEFRp-----DGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDAlWP 78  human
EGX49782       7 QFYIRYYSGHSGRFGHEFLEFDFKvvp-ggCALARYANNSNYRNDSLIRKEMFVSALMIKEIKRIIKESEIMKEDDAkWP 85  Arthrobotrys ol...
XP_503327     47 AFYLQYYSGHTGRFGHEFLEFDFQlldqgrSALLRYANNSNYKNDTLIRREVAVSPVVVKVLKKMIKESEILKENDAkWP 126 Yarrowia lipoly...
CBQ70873       3 DFYVRYYTGHQGRHGHEFLEFEYS------RGRLRYANNSNYRNDSLIRKEMWISPLMVDELRRIVEESEIMQEDDAkWP 76  Sporisorium rei...
O43037         3 DFYVRYYSGHHGRFGHEFLEFDYHs-----DGLARYANNSNYRNDSLIRKEMFVSELVLKEVQRIVDDSEIIKESDEsWP 77  Schizosaccharom...
XP_003381674   5 QFYLRYYGGSRGKFGHEFIEFVIKp-----NGHFMYINNSHYKNDTVIKRKGYLSATAIQAFKDMIKDSNILTEDDSkWP 79  Trichinella spi...
CBH11997      25 LHYVRYFAGHTGRYGNEFLEFDIRd-----DGTLKYGNNSRYRNENIIKKQARISPAVLEEIKRLIILSGILERDDEcWP 99  Trypanosoma bru...
XP_002289486   9 EFYVRYYVGHRGEFGHEFMEFELSp-----SGKLRYANNSNYRNATMIRKEVHLSPAVVEETRRIIQSSDITKIDDSkWP 83  Thalassiosira p...
CCA15374       6 DFYVRYYVGHRGKFGHEFMEFEFKs-----DGKLRYANNSNYKRDSMIRKEVTVSKAVLEEVKRIIQDSEITKEDDRhWP 80  Albugo laibachi...
EGG23744      33 DFYMRYYIGHKGKFGHEFLELEFRn-----GGKLRYANNSRYKSEQIIRKEVTVSKAVLEVLIKMIGESGVMQEDDKlWP 107 Dictyostelium f...
Feature 1                                 # ###               ##  ## ### ###  ####### 
2HYI_A        79 PPDR-VGRQELEIVIGdEHISFTTSKIGSLIDVNQSkDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146 human
EGX49782      86 QKNK-DGRQELEIRMGnEHISFETAKIGSLVDIQESaDPEGLRVFYYLVQDLKALVFSLISLHFKIKPI 153 Arthrobotrys oligospora AT...
XP_503327    127 PKNR-DGKQELEIKFAnYHIAFETGRIGSLSDVQRSdDPEGLRTFYYLVQDIKALVFSLVGLHFKIKPI 194 Yarrowia lipolytica CLIB122
CBQ70873      77 KKNA-TGRQELEVRLGkEHISFETAKIGSLVDVQDSdDPEGLRVMYYLVQDLKCLVFSLISMHFKIKPI 144 Sporisorium reilianum SRZ2
O43037        78 PENK-DGKQELEIRMNgKHIMFETCKLGSLADVQNSdDPEGLKVFYYLIQDLKALCFSLISLNFKLRPV 145 Schizosaccharomyces pombe ...
XP_003381674  80 EPDY-KGKQELEICMDgQHVSFTCCKLFSVSDCENSrDPDGLRALYYLAQDLKCLVFAIMSVHFKIKPI 147 Trichinella spiralis
CBH11997     100 QPDR-NGRQELEIHLGdTHISFVTNKITSLSEVESPdKPKGLDTFYYFVRDIKALVLALVSLHFKIKAW 167 Trypanosoma brucei gambien...
XP_002289486  84 EPQKgKARQELEIKMGcEHIAYTCAEIGSLVDVMKSvDPDGLRVFYYLTQDLRCLMFSLISLHFKIKPI 152 Thalassiosira pseudonana C...
CCA15374      81 EPDR-VGRQELEVVFDdEHISFNCSKIGSLLDVQDSkDPDGMRVLYYLVQDLKCLVFSLITLHFKIKPI 148 Albugo laibachii Nc14
EGG23744     108 EPDV-VGKQELEIVLNnEHISFTTTKIGSLMEVEKSkDPEGLKVFFYLIQDIKCLVFSLIGLHFKIKPI 175 Dictyostelium fasciculatum

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap