3ALQ


Conserved Protein Domain Family
TNFRSF1B

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cd10577: TNFRSF1B 
Click on image for an interactive view with Cn3D
Tumor necrosis factor receptor superfamily member 1B (TNFRSF1B), also known as TNFR2
TNFRSF1B (also known as TNFR2, type 2 TNFR, TNFBR, TNFR80, TNF-R75, TNF-R-II, p75, CD120b) binds TNF-alpha, but lacks the death domain (DD) that is associated with the cytoplasmic domain of TNFRSF1A (TNFR1). It is inducible and expressed exclusively by oligodendrocytes, astrocytes, T cells, thymocytes, myocytes, endothelial cells, and in human mesenchymal stem cells. TNFRSF1B protects oligodendrocyte progenitor cells (OLGs) against oxidative stress, and induces the up-regulation of cell survival genes. While pro-inflammatory and pathogen-clearing activities of TNF are mediated mainly through activation of TNFRSF1A, a strong activator of NF-kappaB, TNFRSF1B is more responsible for suppression of inflammation. Although the affinities of both receptors for soluble TNF are similar, TNFRSF1B is sometimes more abundantly expressed and thought to associate with TNF, thereby increasing its concentration near TNFRSF1A receptors, and making TNF available to activate TNFRSF1A (a ligand-passing mechanism).
Statistics
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PSSM-Id: 276903
Aligned: 11 rows
Threshold Bit Score: 250.855
Created: 13-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Comment:TNFR2 binding in an antiparallel manner in this structure
  • Structure:3ALQ: Human TNFRSF1B dimer interface; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                     ##  #              
3ALQ_R         8 CRl--REYYDqtAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDsTYTQLWNWVPECLSCgSRCSsDQVETQACTREQNRI 85  human
NP_035740     40 CQi-sQEYYDrkAQMCCAKCPPGQYVKHFCNKTSDTVCADCEAsMYTQVWNQFRTCLSCsSSCTtDQVEIRACTKQQNRV 118 house mouse
EGW14158      36 CRd-pKEYYNkkVQMCCAACPPGQHVKHFCTQTSDTVCADCEEgTYTKLWNRLPTCLSCgSRCGdDQVKTQACTKQQNRV 114 Chinese hamster
EHB16610      13 CQv--KEYYEntAGMCCSLCQPGQHVKALCTKTSDTVCTPCEEsTYTQLWNWLYTCLSCrSPCSsDQVEIQACTPQQNRV 90  naked mole-rat
AEC32946      40 CRlplKEYYDtkAQMCCSKCPPGFRIQTSCNRTSDTVCGSCESsTYTQLWNSVSACFSCnSRCSsDQVETQACTPKQNRI 119 pig
BAC55966      31 CRnpsTEFYEerLKKCCSKCPPGQRKAESCSHSVDTKCIPCLPdTYTAVWNRSPQCFACsPPCRkGFVENQTCTLSWDRI 110 chicken
XP_002191348  43 CSnpsTEFYDeeLNKCCSQCPPGQYRTRSCSHTMDTKCSPCRPkTYTAIWNHSPQCFACsPPCRkGLVQNQTCTRSQDRI 122 zebra finch
ELW68631      40 CQe--REYLDqtTKRCCSMCPPGHSVRKLCTKTSDTICVPCEDsTYTQFWNWIPGCFSCdPPCSpGQVEIQACTLEQNRI 117 Chinese tree shrew
XP_003765148  43 CGe--IEYYSdkIQMCCDKCPPGQRVLEFCTRNSNTVCGDCEEdTYTEVWNWIRECHSCrRRCNrDLVETQNCTRRENRM 120 Tasmanian devil
XP_006127980  38 CKdehSEYFDenVNKCCSKCRPGFHMLHSCNSSTDTQCEPCPNnMYTAIWNKARRCLGCsSPCGaGLVQTQECTRTQDRI 117 Chinese soft-sh...
EPQ12233      19 CQr--REYYDerAQMCCSMCPPGYHVQSSCTKTSDTVCAPCEDsMYTELWNWVPECLSCsSRCSsELVEAQACTREQNRV 96  Brandt's bat
Feature 1           #                                                    ###                     
3ALQ_R        86 CTCRPGWYCALSKQEg---CRLCAPLRKCRpGFGVARPGTetSDVVCKPCAPGTFSNTTSsTDICRPHQICNVVAIPGNA 162 human
NP_035740    119 CACEAGRYCALKTHSg--sCRQCMRLSKCGpGFGVASSRApnGNVLCKACAPGTFSDTTSsTDVCRPHRICSILAIPGNA 196 house mouse
EGW14158     115 CTCKADMYCALPTNTd--sCRQCIRLSKCGpGFGVAGTRSanGNVVCKACAPGTFSDTTSsTDMCKPHRICSILAIPGNA 192 Chinese hamster
EHB16610      91 CTCRPGQFCILGSPDs---CRQCIPLRKCPpGFGVVKPGTasSDVHCAPCAPGTFSNTLSsTEVCRPHRKCSSVAIPGNA 167 naked mole-rat
AEC32946     120 CSCKPGWYCTLGRQEg---CRLCMALRKCSpGFGVTKPGTatSDVVCAPCAPGTFSSTLSsTDTCRPHRICSSVAIPGTA 196 pig
BAC55966     111 CSCPPNEYCISKMYQn---CHICKVHKKCGrGYRVSRRGTdsTDTECKPCPPGTFSDEESyDTSCIPHTVCKSVAVAGNN 187 chicken
XP_002191348 123 CSCPPHKYCVSKLDEy---CELCRTHKKCGkGYRVSRRGTdsTDTECKPCPPGTFSPEESyNTSCTPHTICKSVAVPGNS 199 zebra finch
ELW68631     118 CTCKPGWYCVLKRQVg---CRQCVPLSKCLpGHGVTTQATatSDVKCSACPPGTFSDTTSsTDTCRPHRICSLVATPGNA 194 Chinese tree shrew
XP_003765148 121 CGCKSGSFCVTGNQGt---CLQCLKFAKCPrGSGVAEQGTsnSNVKCVPCAPGTFSDTISsTDTCKPHRVCHSVAVPGNA 197 Tasmanian devil
XP_006127980 118 CSCSANSYCASGLKPsqgrCLFCRAHKTCAkGYGVSKPGTdsTNTECSPCPPGTFSDVESsTAPCKPHRVCQSVSVQGNA 197 Chinese soft-sh...
EPQ12233      97 CACRPGWYCVLKSQHr---CQVCAPLRKCPpGFGVVAPGTptSNVVCAACAPGTFSDTASsTDTCRPHRFCESTAIPGNA 173 Brandt's bat
Feature 1          # #  
3ALQ_R       163 smDAVCT 169 human
NP_035740    197 stDAVCA 203 house mouse
EGW14158     193 srDAVCA 199 Chinese hamster
EHB16610     168 tmDAACA 174 naked mole-rat
AEC32946     197 rmDAVCT 203 pig
BAC55966     188 vnDTVCH 194 chicken
XP_002191348 200 rnDTVCS 206 zebra finch
ELW68631     195 stDAVCA 201 Chinese tree shrew
XP_003765148 198 tsDVICN 204 Tasmanian devil
XP_006127980 198 tgDTICM 204 Chinese soft-shelled turtle
EPQ12233     174 smDAVCT 180 Brandt's bat

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