2W9M,2YB1,1M65,2ANU,3E38,3DCP


Conserved Protein Domain Family
PHP_HisPPase

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cd07432: PHP_HisPPase 
Click on image for an interactive view with Cn3D
Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase
HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. HisPPase can be classified into two types: the bifunctional HisPPase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.
Statistics
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PSSM-Id: 213987
Aligned: 191 rows
Threshold Bit Score: 51.4713
Created: 8-Apr-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:The active site of PHP is characterized by a trinuclear metal cluster liganded by histidines, aspartate and glutamate.
  • Structure:2W9M; Deinococcus radiodurans PolX PHP domain binds 3Zn2+ ions
  • Structure:1M65; Escherichia coli YcdX PHP domain binds Zn2+ and 2Na2+ ions
  • Structure:2YB1; Bifidobacterium adolescentis Amidohydrolase PHP domain binds 3Mn2+ ions
  • Structure:3DCP; Listeria monocytogenes HisK PHP domain binds Zn2+ and 2Fe3+ ions
  • Structure:2ANU; Thermotoga maritima HisPPase PHP domain binds 4Zn2+ and 2Cl- ions
  • Structure:3E38; Bacteroides vulgatus HisPPase PHP domain binds 3Zn2+ ions

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #                              #                                           
2W9M_A       329 GMIHTHSTWSdgg-asIREMAEATLTLGHeFLGTADHsraayyangltierl----------reqlkeirelqragLPIV 397 Deinococcus rad...
YP_003639412   5 ADLHTHTNFSadgkdhMADMCRAAISKGLsYICFTDHidnnpsdngykyfnya-------kysetiermreefgdkIQVL 77  Thermincola sp. JR
ZP_08157262    4 ADMHIHTTFSpdgkssMEEQCIKAIEIGIpIICFTDHvdfnsseinvgriinkastnfdvseyfyevnrlrriynsIQIL 83  Ruminococcus al...
YP_001030944   2 YDFHCHTTMSdge-liPTELIRRMAVAGYtEMAIADHadfsnvelliqs---------------qekvkrsaalygVRLF 65  Methanocorpuscu...
YP_503901      2 YDFHTHTLLSdgd-llPTELLRRMQVLGYtVVGITDHvdagnidetlvs---------------lgrvaksahtmgIKLL 65  Methanospirillu...
YP_448210      7 IDLHTHSIFSdge-llPSELARRADVLGHkALAITDHvdasnievaski---------------seavndirdnwdINII 70  Methanosphaera ...
Q58691         3 FDFHTHTVFSdge-liPAELVRRARVLKHrAIAITDHadfsnykeliekt-------------tiakeelkkywddIIVI 68  Methanocaldococ...
CAJ73090       2 IDLHTHTLFSdgv-llPSELIRRCEVKGFrGLAITDHadysnidivipnv--------------lkacqeiasttrMKVC 66  Candidatus Kuen...
YP_002248452   2 IDLHIHSVFSdge-liPAEIIRRAEAIGYkALAITDHadhsnidliipri--------------vkvmeriqpftnMVLL 66  Thermodesulfovi...
2649010        2 FDLHVHSVFSdge-liPSEIARRMYAAGNkGFAITDHadftniqdilak---------------ltrikehmesyeAKFL 65  Archaeoglobus f...
Feature 1           #                                                                     #      
2W9M_A       398 AGSEVDilddgsldfpddvlgeldyvvvsv---------------hsnftldaarqterliravshplVTVLGHAtgrll 462 Deinococcus rad...
YP_003639412  78 KGIEFAephlyprefedvlkkdfdivmvgihylgetyvgdkvisgnyskqqifreyyrevlkavkfggFDVLAHFdlpkr 157 Thermincola sp. JR
ZP_08157262   84 IGIEFSephlfptefedyssmpfdyilgsihhcygs---vfpgaknieeskaideyynlmlksiqtceFQAMAHIdfprr 160 Ruminococcus al...
YP_001030944  66 TGVEIThvppaeiadlakyarslgaevvi----------------vhgetitepvapgtnlaavtcpdVDILAHPgmise 129 Methanocorpuscu...
YP_503901     66 RGVEIThvppveipdlaryakengadivv----------------vhgespvepvmpgtnhaalscphVDILAHPglite 129 Methanospirillu...
YP_448210     71 PGVEIThtpievidklankarkygaeivv----------------vhgetivepvrpgtnrkaaespeVDIIGHPglitp 134 Methanosphaera ...
Q58691        69 VGVELThippksipkmakkakdlgaeivv----------------vhgetvvepveektnyyasisedVDILAHPgfidk 132 Methanocaldococ...
CAJ73090      67 VGAELThvrlehiklmvqrarelgacivl-----------------vhgetitepvipgtnraaieagADILTHPglisv 129 Candidatus Kuen...
YP_002248452  67 PGIEIThvppdtipdlakesrrlgakivi-----------------vhgetlvepvkegtnikalqsdIDILAHPglite 129 Thermodesulfovi...
2649010       66 VGVEIThvppsligkavelawkegaeivv-----------------vhgetvaepvkegtnlaalseeITILAHPgimse 128 Archaeoglobus f...
Feature 1                                                                      # # 
2W9M_A       463 lrrpgya--ldldavlgaceaNGTVVEINAnaarldldwr-------ealrwrerlkFAINTDAHV 519 Deinococcus radiodurans
YP_003639412 158 yfkgsysekemtleilqemvnKGIALEINTsplrrgftectpdseilkqyieaggtkVTTGSDAHS 223 Thermincola sp. JR
ZP_08157262  161 yfdnwnvsdtimdeilnamikKDIILEVNTssimnasdeplprysiidryvqlggrrVVLGSDAHI 226 Ruminococcus albus 8
YP_001030944 130 ee-------------allaakNGVFLEITSrnghnkanghv------lasarragagVVVQSDIHG 176 Methanocorpusculum labreanum Z
YP_503901    130 ed-------------atlarkHNIALEITArgghnrtnghv------ariaektgclMVVDSDAHH 176 Methanospirillum hungatei JF-1
YP_448210    135 ee-------------veiaidNDVSLEISArkghclgnghv------aklgldmganLVLDTDTHS 181 Methanosphaera stadtmanae DSM...
Q58691       133 et-------------aenlkeNDIFVEITSrrghnitngyv------aniarefglkTLINTDTHA 179 Methanocaldococcus jannaschii...
CAJ73090     130 dd-------------arlakeKGVRLEISGrkghayanghv------akmakkvgakLVIGSDSHA 176 Candidatus Kuenenia stuttgart...
YP_002248452 130 ee-------------aieasaRNIYLEITSrrghslsnghv------ahaalkygakLVINTDCHS 176 Thermodesulfovibrio yellowsto...
2649010      129 ee-------------aelareNGIYVEISArrghclgngrv------arlaekygfeLVINTDMHS 175 Archaeoglobus fulgidus DSM 4304

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