5UP2,5EWJ,5EWM,5EWL


Conserved Protein Domain Family
PBP1_iGluR_NMDA_NR1

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cd06379: PBP1_iGluR_NMDA_NR1 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-D-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore can be classified as excitatory glycine receptors. NR1/NR3 receptors are calcium-impermeable and unaffected by ligands acting at the NR2 glutamate-binding site
Statistics
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PSSM-Id: 380602
Aligned: 16 rows
Threshold Bit Score: 437.926
Created: 13-Jul-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimertrimer
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:5EWJ; heterodimeric interface of the Xenopus laevis NMDA Receptor subunit Glun1 And Glun2b, N-terminal domain; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                       ##### ##  ##                   
5UP2_A      25 KIVNIGAVLSTKKHEQIFREAVNQANK-----RHFTRKIQLNATSVTHRPNAIQMALSVCEDLISS--QVYAILVSHPpa 97   African clawed frog
5EWJ_A       3 KIVNIGAVLSTKKHEQIFREAVNQANK-----RHFTRKIQLQATSVTHRPNAIQMALSVCEDLISS--QVYAILVSHPpa 75   African clawed frog
CDS31694    26 VDFTIGALLSSTISMKHFNSSISDVRA-----HVSEKQITFTALTEILASNALTATKQLCSMISAG--NARLFAVVVSnp 98   Hymenolepis micr...
KER23769    18 VEFTIGALVSDANILANFERLVNSVSD-----EINDNLVRFNAKGGLLSLNALKATEQVCSLFNVTkgRMLALIVSHPsg 92   Opisthorchis viv...
AAY87407    25 KIVNIGAVLSTKKHEQIFREAVNQANK-----RHGTWKLQLNATSVTHKPNAIQMALSVCEDLISS--QVYAILVSHPpa 97   chicken
OQV18471    48 LTINIGALLDSEQHRLFFLKSIQEVNAhr--lSNLPDGLTLNGTVITIQTSPIWTAMEVCQGLLAT--PVHAILIHHPal 123  Hypsibius dujardini
ELU12705    22 SAITIGAVLSSPEHGEFFSKAVEEANSrivptLNLPEGFHINHTFIEMNDNPIRTAKDICEDVIPR--QVYVVIASHSlh 99   Capitella teleta
EFX71929    54 TNFTIGAVLNDDRHDTLFREAITELNSd---yTLLPVNATLHSASMRLDPNPIRTALKMCNYLIAQ--QVYAVIVSHPvk 128  common water flea
NP_730940   37 STYNIGGVLSNSDSEEHFSTTIKHLNFd---qQYVPRKVTYYDKTIRMDKNPIKTVFNVCDKLIEN--RVYAVVVSHEqt 111  fruit fly
OWF49459    24 RIVRIGAILSSPQNQQIFQEAVRNLNNh----SEVSKIIRFEFTSILMDPNRIRSALKLCDELVKK--AVHIVIVSHPpd 97   Yesso scallop
Feature 1                      ##                #   #                                         
5UP2_A      98 ptdh-ltptpISYTAGFYRIPVIGLTTRMSIYSDKsIHLSFLRTVPPYSHQALVWFEMMRlFNWNHVILIVSDDh-eGRA 175  African clawed frog
5EWJ_A      76 ptdh-ltptpISYTAGFYRIPVIGLTTRMSIYSDKsIHLSFLRTVPPYSHQALVWFEMMRlFNWNHVILIVSDDh-eGRA 153  African clawed frog
CDS31694    99 pnspsvpplsISYIAALYGLPVICVSARQAAFSNKyAHASFLRTVPPYVQEAAIWAQLIDaFEWHEVIIIHSDNnhdSKA 178  Hymenolepis micr...
KER23769    93 avg--applsVSFTTSFYYLPTIGISARQAAFSDKySHVSFLRTVPPYSREAAIWADLIVaFGWREVCVIHSNDq-dAKA 169  Opisthorchis viv...
AAY87407    98 pndh-ltptpVSYTAGFYRIPVIGLTTRMSIYSDKsIHLSFLRTVPPYSHQANVWFEMMRvFNWNHVILIVSDDh-eGRA 175  chicken
OQV18471   124 pgfq-lasaaASYTAGFYRIPIISISSRESSFSDKsIHKSFLRTVPPFTHQADIWVAILLhFGWKKIVVIVSGTq-dGRM 201  Hypsibius dujardini
ELU12705   100 wsl---stvaISFTCGFYKIPVIGISARESTLSDKnVHSSFMRTVPPYSDQAEAWAELMKfFEFKRVILIHSSDq-eGRA 175  Capitella teleta
EFX71929   129 gdl---spatISYTGGFYHIPIVGISSREAAFSDKnIHVSFLRTVAPFFHQADVWAALLRhFHFWQVMVIHSADv-dGYS 204  common water flea
NP_730940  112 sgd--lspaaVSYTSGFYSIPVIGISSRDAAFSDKnIHVSFLRTVPPYYHQADVWLEMLShFAYTKVIIIHSSDt-dGRA 188  fruit fly
OWF49459    98 dvd--qapisVSYTCGFYNIPVIGISTRDSSFSDKnVHPTFLRTVPPYFHQADAWLEMLThFAWKQVIFIHSMDe-eGRM 174  Yesso scallop
Feature 1                                                                                      
5UP2_A     176 AQKKLETLLEEKEs---------------------KADKVLQFEPGt------KNLTALLLEAKELEARVIILSAseDDA 228  African clawed frog
5EWJ_A     154 AQKKLETLLEGKEskskkrnyenldqlsydnkrgpKADKVLQFEPGt------KNLTALLLEAKELEARVIILSAseDDA 227  African clawed frog
CDS31694   179 LIARLESARQTVDf---------------------KIAQTIGVNTDeedvvnlKDLQNKLDSIRKGQTRVILLFVtrRYA 237  Hymenolepis micr...
KER23769   170 LLSGLERLSILDPagn----------------kyfKIMRQVAINTDeedaarvRDFVSLLRPIRNEQTRAILLFLrrSFA 233  Opisthorchis viv...
AAY87407   176 AQKKLETLLEEREskskkrnyenldqlsydnkrgpKAEKVLQFDPGt------KNVTSLLLEAKELEARVIILSAseDDA 249  chicken
OQV18471   202 LLGRLQTRLETEDi---------------------TIEKNIELAPGa------VNITVDLEAMRELHSRVYLLYAeeRDA 254  Hypsibius dujardini
ELU12705   176 MLGKFQSKAETKDi---------------------EIEKSIQYTVGq------ENFTQQMAPMLDLSSRVVLLYAveEDA 228  Capitella teleta
EFX71929   205 LLNRLQTQFQSNDddvgd-------------qreiKIELTKEFAPAe-----lEDFTKELQEMSEGQSRVYLVYAnaQDA 266  common water flea
NP_730940  189 ILGRFQTTSQTYYddvd---------------vraTVELIVEFEPKl------ESFTEHLIDMKTAQSRVYLMYAstEDA 247  fruit fly
OWF49459   175 ILSRFKWLAEKEDi---------------------MLEKVYKYPSGi------KKFTSILKSLPSLQSRVILLSAsqRDA 227  Yesso scallop
Feature 1                                                                                      
5UP2_A     229 TAVYKSAAMLdmTGAGYVWLVGEREisgSALRYAPDGIIGLQLingknESAHISDAVAVVAQAIHELFe----MEQITDP 304  African clawed frog
5EWJ_A     228 TAVYKSAAMLdmTGAGYVWLVGEREisgSALRYAPDGIIGLQLingknESAHISDAVAVVAQAIHELFe----MENITDP 303  African clawed frog
CDS31694   238 EHVFTVADRLgiIGKEWAWIISEQC---LGAKNLPLGVLSVRLaq-sdELLHVEDAARVVTEGIIKFTrrepnAMFGLQS 313  Hymenolepis micr...
KER23769   234 EYIFAAARKLgmLDAEWAWIVTEQA---LYASNIPQGVIGVRLlq-ssELDHLADAVRVATQGILSLAranphVMPVLQA 309  Opisthorchis viv...
AAY87407   250 ATVYRSAAMLnmTGSGYVWLVGEREisgNALRYAPDGVIGLQLingknESAHISDAVAVVAQAVHDLFe----KENITDP 325  chicken
OQV18471   255 EKVYHHARLAglFDSGHVWLVTEQA---LGAANAPTGTLGLKLlhngqVEEHIRDTIQVVTQALAVSFs----EHILSDP 327  Hypsibius dujardini
ELU12705   229 HKIYAEAARLnlTGDSYAWFVTEQA---LRPSNVPQGTIGLQLihgldEDAHIHDSITAVATAFSSLYs---qGINITSS 302  Capitella teleta
EFX71929   267 VIIFRDAAKFnlTGAGHIWLVTEQA---LDVPGVPIGSLGLQQmhaanEAAHIRDSLYLLSSALREMEv---sERDMTEP 340  common water flea
NP_730940  248 QVIFRDAGEYnmTGEGHVWIVTEQA---LFSNNTPDGVLGLQLehahsDKGHIRDSVYVLASAIKEMIs----NETIAEA 320  fruit fly
OWF49459   228 ESLFRDAKNLnlTTAGYAWIVSEQA---LEASTIPVGMLGLKLsnstnEDVHIRDSVQVIGKAMRQFFvdnsdLQNITDT 304  Yesso scallop
Feature 1         ###                      ## ##                                               
5UP2_A     305 PRGCVGnt-------------niWKTG-PLFKRVLMSSKYPdgvTGRIEFNEDGDRKFAQYSIMNLqn------------ 358  African clawed frog
5EWJ_A     304 PRGCVGnt-------------niWKTG-PLFKRVLMSSKYPdgvTGRIEFNEDGDRKFAQYSIMNLqn------------ 357  African clawed frog
CDS31694   314 VHHCRQelespr------nlsqsWFRYnTKLYQAMTEVIFEdgeTGHVEFDIHGDRVGALYDIVNVqphsncgt------ 381  Hymenolepis micr...
KER23769   310 VSACREdpleiqshptqsgqtygWNEYaRKLYNHMLQVNFSdgrTGRIEFDQHGDRVRPVYEIVNAqfprgqisdtgtvt 389  Opisthorchis viv...
AAY87407   326 PRGCVGnt-------------niWKTG-PLFKRVLMSSKYSegvTGRVEFNEDGDRKFANYSIMNLqn------------ 379  chicken
OQV18471   328 PNTCNDta-------------ftWKDG-PSFLQNMLKQTVAngrTGMVAFDEIGDRRTAEYQVINVlpg----------- 382  Hypsibius dujardini
ELU12705   303 PVDCSDqp--------------dWPSG-LTILRHIEQQKLEfgrTGKVTFNDVGDRLGSVYSIVNVlad----------- 356  Capitella teleta
EFX71929   341 PQDCNSsg-------------aiWETG-RIYFEYIKKQVLLnglTGKIAFDDNGDRLFSEYDIVNVdhp----------- 395  common water flea
NP_730940  321 PKDCGDsa-------------vnWESG-KRLFQYLKSRNITg-eTGQVAFDDNGDRIYAGYDVINIreq----------- 374  fruit fly
OWF49459   305 PTDCRSad-------------nnWQIG-RKILEALKAEKLEkghTGQVSFNEDGDRVNAVYFIRNSqq------------ 358  Yesso scallop
Feature 1                                                            
5UP2_A     359 --------------rkLVQVGIFdg---------------sYIIQNDRKIIWPG 383  African clawed frog
5EWJ_A     358 --------------rkLVQVGIFng---------------sYIIQNDRKIIWPG 382  African clawed frog
CDS31694   382 ---------fksckpvINTVGKYvqakr--------gptksQFSIEIERIYWPG 418  Hymenolepis microstoma
KER23769   390 qtsglsgsafgfqrpeLVPIGHYgnpqpipllwyssipypkLLSINMSAIVWPG 443  Opisthorchis viverrini
AAY87407   380 --------------rkLVQVGIYng---------------sNVLTNDRKIIWPG 404  chicken
OQV18471   383 --------------ghYLVVGACqtdtd--------sqntlKLTLDRRKMVWPG 414  Hypsibius dujardini
ELU12705   357 --------------ksTQEIGTYrand-----------ptwRENMQPQSIIWPG 385  Capitella teleta
EFX71929   396 --------------ngRTKVGQYfysky---------qsvlKLSVNDSEITWPG 426  common water flea
NP_730940  375 --------------qkKHVVGKFsydsm---------rakmRMRINDSEIIWPG 405  fruit fly
OWF49459   359 --------------dkVSMVGYYgnkqa---------tepaLKITGENKIVWPG 389  Yesso scallop

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