1EWK,2E4Z,5X2M,2E4U,5FBH


Conserved Protein Domain Family
PBP1_GPCR_family_C-like

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cd06350: PBP1_GPCR_family_C-like 
Click on image for an interactive view with Cn3D
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)
Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further divided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.
Statistics
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PSSM-Id: 380573
Aligned: 46 rows
Threshold Bit Score: 179.028
Created: 14-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:1EWK; Rattus norvegicus mGuR subtype 1 complexed with glutamate, contacts at 3.5A
  • Structure:2E4U; Rattus norvegicus mGluR subtype 2 complexed with glutamate, contacts at 3.5A
  • Structure:2E4Z; Rattus norvegicus mGluR subtype 2I complexed with 2-morpholin-4-ylethanesulfonic acid, contacts at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  #                                                   
1EWK_A      14 IIGALFSvhhqppaekvperkcgeireqYGIQRVEAMFHTLDKInadpv--llpnITLGSEIRDSCwhsSVALEQSIEFI 91   Norway rat
KOF85549   488 LILGIFSlhdrgqgfg----cgdvrkpfIDTIAGEAFLYYVNKFkti-----sdsVKLGALLLDDCy-nPLRAHSNITSI 557  Octopus bimaculo...
OWF46220    53 YIGGLFGvhdraaday---scqnaplreRGLLNMEAFHWAIKEFgtn------qnVSIGGVALDSCs-rVEQTIENILSF 122  Yesso scallop
OWF56546   431 LLMGMFSihdpkdeeha-facgkfrnytLDVIGQESFFHAIYRLrnl------tkIQFGGISFDDCy-sSTVGSLTVTQF 502  Yesso scallop
KOF92296     8 NLVAVFDihfaddkaf---nqcgnlntaSGFQHALAFFYAIRNVnkntrnrlassLQLGGVALDTCs-lPVTLGLDVYSL 83   Octopus bimaculo...
OWF40241  2057 YIAYVSDvhdrdpndp---yacgpintvGNFQNMMAFFYALNLVnsdnn--lpatLKLGGIAFDTCs-sSNRIGQDIYSL 2130 Yesso scallop
EKC25151   516 IILGIFPlhtinetdky--gcgdldtgsYFVLVVEAFFFAVKEIsqk------tnMNFSALAFDDCy--SKNRISLILSE 585  Pacific oyster
PIK61877    33 TLGFMFSylsphfhgd---icsqtipdySAIQLVEAAIHAVNRAnenn---tvpgVTIGLEAWDSCysaTVATDRSISFL 106  Japanese sea cuc...
NP_501400   56 QIGGSFPlhqddc----------ttlrpDTVQEIVAIQWALTHWnqkd---engdCKLGLYAGDTCsrsAESLSQSLRFL 122  nematode
KOF75838   927 VIAAPPPlldts-----------yysgsPPTRNNDGWCVYVGIFqdk-----lrgVQLGGVGLDSCd--NDVMAANLVSN 988  Octopus bimaculo...
Feature 1                                                                    ##                
1EWK_A      92 RdslisirdekdglnrclpdgqtlppgrtkkPIAGVIGPGsssvaiqVQNLLQLFDIPQIAYSAtsidlsdktlYKYFLR 171  Norway rat
KOF85549   558 Lsgetkikdi------------stcqlispsNIVGVVGSLsssvtkaIANVFMLLKRPVISYAAssedlddrisYPYFLR 625  Octopus bimaculo...
OWF46220   123 Etckvgfgn---------------lnavsprNLLAYVGPDrsseamaVATLLKDMNKTQVSHAAtspelnnqdmYPFFLR 187  Yesso scallop
OWF56546   503 Lsgttklpfg------------stgqtidptKVLGVIGPYpsgvtvpLTLLFSRLKLPSVSYASsspdlddvinYPYFLR 570  Yesso scallop
KOF92296    84 Ltgssrcrkkg-----------aneiifppaSIVGFVPKAssn-avpIANMLRDYGIMTLSPSAtttklsdqsiYPHFLR 151  Octopus bimaculo...
OWF40241  2131 Lsgegicten-------------tgqvippsNLVAYLAKGsen-aisVSGILSPLKFTTLSQSAtsvalsnkdfHQYFLR 2196 Yesso scallop
EKC25151   586 Ffsgklkipd------------eqgnfldpnNVVTVIGAAasgvtvpMTFQFTALGIPVISYASsspdlddrinYPYFLR 653  Pacific oyster
PIK61877   107 Gdrkvsyeqn-------------vgdncgsqLKAAMIADLrgergpaVASLLSDAKSPVVSYAAtipsltpssgYDFLSR 173  Japanese sea cuc...
NP_501400  123 Dsvgyhepke-------------crtetpgaKLLGLIAPKdyessmsLGKFLSVSAIPVAAYSSesvnalteldVENTIA 189  nematode
KOF75838   989 Lnngmmkvak-------------ktvhlnpaDIYAYIGGGtsdssiyLDRILRSMQIPLVGYGAtttqlndkyeFPNFLR 1055 Octopus bimaculo...
Feature 1                                                                                      
1EWK_A     172 VVPSDtLQARAMLDIVKrynwTYVSAVHTEGn-yGESGMDAFKELAAQEg--LCIAHSDKIysna---geksFDRLLRKL 245  Norway rat
KOF85549   626 TVPSDnQQVNAIIQILKhfdwRYVGLIYATNn-yGLKAKQLLLSAAKENq--ICLFPFKGIadskiktkhdeFDEIFSVA 702  Octopus bimaculo...
OWF46220   188 AVPSDeHDATIIAKMLQslniKYVLGVYLGNg-yGRGGFEALKSKLVGT---CMVYQTEMPvhat----ddqLQAIADEL 259  Yesso scallop
OWF56546   571 TVPSDvTQVEAMVKIIEhmgwKRVGMLYVNNn-yGSKGKALFMDKAASSg--ICVTTPIEMsetg---nqneLYQISLDI 644  Yesso scallop
KOF92296   152 TVPPDdLQAKVMMDILKkmqwTYVSSVYSDNe-yGKSAIQTFLKAADNDt-aVCATKIISMpmna---tnkeAKDIVERL 226  Octopus bimaculo...
OWF40241  2197 TVPPDnVQAVVIAEVLQtfgwDYISVVYTDDa-yGNAAIKTLLLNTETStprICAAQSISMsldt---tlneAKAIIDSL 2272 Yesso scallop
EKC25151   654 TVPSDvDQARAMIEIVKhlkwKYIGGILYVNnnyGSKGKELLMRYANESd--ICIGKAIELqea-----ednSYDVIDEM 726  Pacific oyster
PIK61877   174 VVPPDsAEAKAIVGLLVsqgwQYISLVYSDTa-eDQAEAKAFQDEARNAk--ICISYTKVIss--------dASQAVSDF 242  Japanese sea cuc...
NP_501400  190 TSPTIgVYVEALIRLINqm-rSNLVTVVDDGa--QNPVVKKVISYLRDAd--IFVSESIPId----------HPFLAQAL 254  nematode
KOF75838  1056 TVPTDdRLAKAIVSFLKhyniPYVQIVHSSGs-fGAKGAEVFREYALENk--ICVAQTIQFieqgi-svadsANNVMKTL 1131 Octopus bimaculo...
Feature 1                                                                                      
1EWK_A     246 RERlpkarVVVCFcegmtVRGLLSAMRRLgvv----geFSLIGSdgwadrd-eviegyEVEANGGITIKLqs------pe 314  Norway rat
KOF85549   703 LIKni--kVIIYFgtssrTVDLLESLNQRkmh----nfFTFIGSdawgkn--nlilsyGHVFAGSIIITVdsskrallke 774  Octopus bimaculo...
OWF46220   260 FLRev-trYVIVYsdgenARKLMNAMQMRdank--vqnFNFIGTsswaddttvtdnlyVNAYTLALTTPAgql----ttd 332  Yesso scallop
OWF56546   645 KSKge--eVIVYFgtearIVDLLTEMKRRveqnsfrydFVFLASedwgdsn-nigsklGSVAKGAITFKFeik-----sa 716  Yesso scallop
KOF92296   227 NREag-arAVVLFlkdyqIRLLLQAAKDLdlv----nrFVWIGSdtwgnnmyvvsnglQETAAGAITIQIrs------kv 295  Octopus bimaculo...
OWF40241  2273 NQRvg-arVVVLFvsdihARLLLQAATERglt----hrFIWLGSdtwanse-yivngyEDAAAGAITIQIrs------ev 2340 Yesso scallop
EKC25151   727 KRTns--dVFLYFgtdvrLKSLLVKMKTDry-----ksVVFLASedwgerq-dildehGDAVIGSITSKFetr-----sa 793  Pacific oyster
PIK61877   243 EQQqqsptIVVAFl---sSMSFLSEFGQRise---ssrFHFIVGhrllp----dlikpNSFSLNLMAVSPstld---lti 309  Japanese sea cuc...
NP_501400  255 EDSds--sIVVSVl---nKQQLLKTVKHPsiy---amsKMWISIptegealdeseqleLLHKDAKLEVVSlqpk---yke 323  nematode
KOF75838  1132 LNKpl-anTVVIFaevlyARELLKVLKREpivi--rnnYKFIAAglwgqrl-dviegvESVAASSVTIAVdg------id 1201 Octopus bimaculo...
Feature 1                                                                      #               
1EWK_A     315 VRSFDDYFLKlrldtntrnpwfpefwqhrfqcrlpg--hllenpnfkkvctgnesleenyvqdsKMGFVINAIYAmahgl 392  Norway rat
KOF85549   775 GISFKKYLKEkdaslnhlknpyfkyfwnqymcdp------skkastcikktfsdndidlyvnnhRIVQTMNAVYAihngl 848  Octopus bimaculo...
OWF46220   333 LAKFYQYLNNlkpsgntwnpwfqsywndkle------------cgvrtcneasdsltgrytpdvYVPFTILAVRSiidgv 400  Yesso scallop
OWF56546   717 DVGFEDYLRNrkpvleptnrwyreywreyfncdpegdfdkrigktcskdlqfsqqdlsnfvddqRVIHTMNAVYAlglgl 796  Yesso scallop
KOF92296   296 LNGFLEYVKQltlekhdgipddwffdfyqdihkcrllftdraknydrictknevitddkiqqdaFIFHTVLAVEMiaigl 375  Octopus bimaculo...
OWF40241  2341 VEGFKNFLRSfdysnnmnmprdwfedlyqtihqcrilnsvvqkvyssicsgderitdamipndpYTLHTIISVFMvangl 2420 Yesso scallop
EKC25151   794 VTGFDSYLQDlkpdvqnsndwfrkfwtnffncnppgrfdktktndcppstgftrsnieqlvknqRIVHVMNAVFAvgtam 873  Pacific oyster
PIK61877   310 VSTFDDYFKGlspdnvntdanlwfrsfweqsyq--------cllgvtcgpgqelqhqqnyrrnpYVLPVIESVNTvveal 381  Japanese sea cuc...
NP_501400  324 LPQFRDYFIRvlrnnfknyqlltsyieqvyn------------ctnedcnlnkdvmmktyvqarTAEASIRMTYAfaava 391  nematode
KOF75838  1202 IQEFDKYLKSkipdnerdnpwfteyyeglfdcylak--pktnlrtkcsnslnrvtksekyaqddSVLNVVNSVFAvalgi 1279 Octopus bimaculo...
Feature 1                                                                                      
1EWK_A     393 qnmhhalcpghvglcdam----------kpidgrklldflikssfvgvsgeEVWFDekGDAPg--RYDIMNLqytea-nr 459  Norway rat
KOF85549   849 kklinekcsgkmceefs-------------skaeelvltiketeilnsldaVKMFDshGNGLi--GFQFHNVqyed--gk 911  Octopus bimaculo...
OWF46220   401 riaalsacgkydlc------------------snllnqenrgqriyggiggTTYFNgqELANnfiSYRILKFqva----- 457  Yesso scallop
OWF56546   797 nevkdlcppdnlhgcqyl-----------keqpedvvkhilnielqsgsesFPIFDekGNGNl--GFTILNLqvagq-dt 862  Yesso scallop
KOF92296   376 nnikecrqdstvsvasclalqknknaiiydsvrkspwidlhlsdedipsnfSFKFTesGYGDi--GYDIMNYrfniyknn 453  Octopus bimaculo...
OWF40241  2421 nsideckrtslsvsaclslqqn---sreliynsiaeaqytvlpddlgsksfNFRYTesGYGDv--GYTILNFrrdltsgn 2495 Yesso scallop
EKC25151   874 vrvkeklcqgvsypceni-----------kshvddvvkeiqavelsgggltYSVFNanRNGNv--GFQILNIqkrdv-ts 939  Pacific oyster
PIK61877   382 rnlqvtkclgssgpcesf-----------mtttpkeiqdeirqtsfstgsqRSNFNgmGSPAs--EDYFIWSidtt---n 445  Japanese sea cuc...
NP_501400  392 qiigankeyektcshass----------ectelimetletmdyafnkqdppEFAGErlQFYRg--TENILLAsgm----q 455  nematode
KOF75838  1280 dktlidlcgvnytgvcsaf--------ksanrnyqlfnniknvqfkefsdvVFKFNpeGDGNk--GYKFFQVqnisp-ih 1348 Octopus bimaculo...
Feature 1                             
1EWK_A     460 ydYVHVGTWhe-----gVLNIDD 477  Norway rat
KOF85549   912 ytYKKIGSFsq----esGLTIDK 930  Octopus bimaculoides
OWF46220   458 sgYTEIGTYt------pGTPLNL 474  Yesso scallop
OWF56546   863 ydYLEVGTYka-----gRLDLSK 880  Yesso scallop
KOF92296   454 yeYVRIGSWv------dSLNLNI 470  Octopus bimaculoides
OWF40241  2496 yaYSQIGTFrk-----gLLSLNR 2513 Yesso scallop
EKC25151   940 yqYKQVGEYkn-----gQLTLSS 957  Pacific oyster
PIK61877   446 gaQTKLGQSlsg---qtSFVADN 465  Japanese sea cucumber
NP_501400  456 veAIEIYNQdkepvtsrLLSFTT 478  nematode
KOF75838  1349 ygYKEVSDSrss---iiHPALQR 1368 Octopus bimaculoides

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