1IRU


Conserved Protein Domain Family
proteasome_beta_type_6

?
cd03762: proteasome_beta_type_6 
Click on image for an interactive view with Cn3D
proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Statistics
?
PSSM-Id: 239731
Aligned: 27 rows
Threshold Bit Score: 257.153
Created: 26-Apr-2006
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
active sitebeta subunit
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1     #               # #             #                                               
1IRU_V      1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHdRIFCCRSGSAADTQAVADAVTYQLGFHSIELneppLVHTAA 80  cow
AAF72737   14 TTIVALKYKDGLVLAADGRTSTGPIIAFRAARKITQITdKVFMCRSGSAADTQIISRYVRRIVQDHELETgedtKVKSVA 93  Cryptosporidium pa...
BAA96834   26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTdNVYICRSGSAADTQVISDYVRYFLHQHTIQLgqpaTVKVAA 105 Japanese rice
NP_194858  13 TTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTdNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHgqpaTVKVSA 92  thale cress
NP_500125  24 TTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITdNMVVCRSGSAADTQAIADIAKYHIDVYTMTEnkpvTIYRSS 103 Caenorhabditis ele...
AAP80693   21 TSIMAVTFDGGVVMGADSRTTTGSYIANRVSDKITPMTdKIFVCRSGSAADTQIISDYCRYYLSMHHIELgedpRVETTA 100 Griffithsia japonica
XP_647188  15 TSIMAVEYDGGVIMGADSRTTTGAYIANRVTNKITPIHeRIYCCRSGSAADTQAISDYVRYYLEMHTSELcdepDVKTAA 94  Dictyostelium disc...
XP_650977  15 TTIIGVVYNGGVLLGADGRTSMGSIVVNRCKNKIRMVSdSIGMCTAGTAAHSETIGDYVKHALRMYTAQTgeepTVLAAA 94  Entamoeba histolyt...
XP_757422  21 TSIMAVAYDKGVILGADSRTTMGSYIANRVTDKLTHLSdRIYCCRSGSAADTQAIADIVTYYLDMYAVESdsppQTKVAA 100 Ustilago maydis 521
EAR86441   26 TSIMALVYDGGVLVGADSRTTSGSYIADRAQDKVDYLHeRIYCLRSGSAADTQTLCSYVRYYLDVHSMELqrrpTVKTAA 105 Tetrahymena thermo...
Feature 1                                                      #                              
1IRU_V     81 SLFKEMCYRYRedLMAGIIIAGWDpqeGGQVYSVPMGGMMVRQsFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160 cow
AAF72737   94 SVARLISYQNKehLLADMIIAGMDpngEFKVFRIPLGGTLIEGsYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLV 173 Cryptosporidium pa...
BAA96834  106 NLIRLLAYQNKnmLQAGMIVGGWDkyeGGQIFSVPLGGTILRQpFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVV 185 Japanese rice
NP_194858  93 NLIRMLAYNNKnmLQTGLIVGGWDkyeGGKIYGIPLGGTVVEQpFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAV 172 thale cress
NP_500125 104 QIFRQFLYNYReqLSASVLVAGWDeelGGQVYAIPIGGFVSRQrSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAV 183 Caenorhabditis ele...
AAP80693  101 RLFNQLCYHNKemLMASIIVGGYDarkGGQVFSIPLGGALIKQpFTIGGSGSSYIYGYCDANFKEGMSKDECIEFVKNAL 180 Griffithsia japonica
XP_647188  95 SLFQLLCYSNKnnLMAGIIVAGWDkhqGGSVYNISLGGSMVKQpFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSL 174 Dictyostelium disc...
XP_650977  95 TSIKNIIYGNKsfLSSSVVCGGYDpvnGATLYRILQSGAMKQDdICVGGSGSTYIWGYCDAHFKKNMTFEEAKQFIVTAV 174 Entamoeba histolyt...
XP_757422 101 NLFQEIVYQNKdrLSAGIIVAGWDkkdGGRVFNVPLGGGVFEQpWAIGGSGSTYIYGYCDATWKAGWGKHQTIEFVKNAL 180 Ustilago maydis 521
EAR86441  106 KLFSNLIYQYQdnLSAAVIVAGIDdneGPSIYACQPSGSCIKQqVAIGGSGSGFIFSYVDANFRPNMDLESAKKLVKTAL 185 Tetrahymena thermo...
Feature 1           #  ##                 
1IRU_V    161 ALAMERDGSSGGVIRLAAIAESGVERQV 188 cow
AAF72737  174 SHAMFRDSSSGGIIRIIVINKSGVEEFV 201 Cryptosporidium parvum
BAA96834  186 SLAIARDGASGGVVRTVTINADGVSRKF 213 Japanese rice
NP_194858 173 SLAIARDGASGGVVRTVIINSEGVTRNF 200 thale cress
NP_500125 184 GLATFRDGSSGGVVRLAVINKAGSQFEL 211 Caenorhabditis elegans
AAP80693  181 SLAMARDGSSGGVIRLVVIDKDGASRQF 208 Griffithsia japonica
XP_647188 175 ALAMFRDGSSGGVIRLCIIDKNGVERKM 202 Dictyostelium discoideum AX4
XP_650977 175 SLAIYRDGSSGGIIHTVNITAEGVQSEF 202 Entamoeba histolytica HM-1:IMSS
XP_757422 181 ALAMRRDGSSGGTIRLVDITEDGVERHF 208 Ustilago maydis 521
EAR86441  186 AHAMSRDGSSGGIIRLVNITKDNVTREF 213 Tetrahymena thermophila SB210

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap