3SWN,3PGG,2FWK


Conserved Protein Domain Family
LSm5

?
cd01732: LSm5 
Click on image for an interactive view with Cn3D
Like-Sm protein 5
The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus uridylation tag of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. LSm2-8 form the core of the snRNP particle that, in turn, assembles with other components onto the pre-mRNA to form the spliceosome which is responsible for the excision of introns and the ligation of exons. LSm1-7 is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet.
Statistics
?
PSSM-Id: 212479
Aligned: 41 rows
Threshold Bit Score: 97.3151
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:This oligomerization interface is flexible and plays a role in both the hexameric arrangement of assembly intermediates and the hetero-heptamer
  • Structure:3SWN, Schizosaccharomyces pombe LSm5-7 hetero-hexamer, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1               #  ##    # ###  # #    ####  ## #                                ########
3SWN_A         6 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDtv--------------tgVTEKHSEMLLNGNG 71  Schizosaccharom...
3PGG_A        26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGfkadeedisggnkklkrvMVNRLETILLSGNN 105 Cryptosporidium...
2FWK_A        26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGfkadeedisggnkklkrvMVNRLETILLSGNN 105 Cryptosporidium...
CAG83117      11 QILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVNtk--------------tgKETNHSKLLLSGKS 76  Yarrowia lipoly...
XP_001430866   3 TILPLGLLDKAISSRVWILMKDDREFEGTLRGFDDFFNMVLENVIELDg----------------gKKNKLESILLNGTQ 66  Paramecium tetr...
P40089         5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLidpede-------srnekVMQHHGRMLLSGNN 77  Saccharomyces c...
EGR32392       5 TILPLELIDKCIGHKIWILLKNNKEVVGTLRGFDDFFNMVLDEAKEYQfqn------------gikNQTNIDSILLNGAH 72  Ichthyophthiriu...
XP_002771506  17 SFLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTEYTilpd-----------ggkRVDKIESILLNGSS 85  Perkinsus marin...
XP_002682294  12 IIQPLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSysed----------gssrTESKLPSIILNGNN 81  Naegleria grube...
XP_002286360   4 RILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVEYSpdprd--------ksvvvKKVLKAEILLNGNH 75  Thalassiosira p...
Feature 1        #####   
3SWN_A        72 MCMLIPGG 79  Schizosaccharomyces pombe 972h-
3PGG_A       106 VAMLVPGG 113 Cryptosporidium parvum
2FWK_A       106 VAMLVPGG 113 Cryptosporidium parvum
CAG83117      77 IYMLVPGG 84  Yarrowia lipolytica
XP_001430866  67 ICLIVPGG 74  Paramecium tetraurelia strain d4-2
P40089        78 IAILVPGG 85  Saccharomyces cerevisiae S288c
EGR32392      73 ITLIVPGG 80  Ichthyophthirius multifiliis
XP_002771506  86 VAMLVPGG 93  Perkinsus marinus ATCC 50983
XP_002682294  82 VAILAPGL 89  Naegleria gruberi strain NEG-M
XP_002286360  76 VAVLVPGG 83  Thalassiosira pseudonana CCMP1335

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap