1O4X,2LE4,1GT0,6HT5


Conserved Protein Domain Family
HMG-box_SoxB

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cd01388: HMG-box_SoxB 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in group B SRY-related high-mobility group (HMG) box (Sox) transcription factors
SoxB transcription factors play critical roles in the regulation of neurogenesis. They can be divided into two main subgroups, SoxB1 (Sox-1/Sox-2/Sox-3) and SoxB2 (SOX-14/SOX-21). SoxB1 proteins suppress neurogenesis by maintaining neural cells in an undifferentiated state. SoxB2 proteins may have the opposite activity and promote neuronal differentiation. SOX-1 is involved in the regulation of embryonic development and cell fate determination. It also acts as a tumor suppressor that plays an anti-tumorigenicity role in different cells and its expression is inhibited in a variety of cancers. SOX-2 plays an important role in various phases of embryonic development, including cell fate and differentiation. Its overexpression and gene amplification may be associated with tumor aggression and metastasis in various cancer types, including breast, prostate, lung, ovarian and colon cancer. SOX-3 is required during the formation of the hypothalamic-pituitary axis. It plays a role in both normal neural development and carcinogenesis. SOX-14, also called SOX-28, acts as a negative regulator of transcription. It is mainly involved in the regulation of neural development. It can also promote proliferation and invasion capacity of cervical cancer cells by activating the Wnt/beta-catenin pathway. SOX-21, also called SOX-A, or SOX-25, promotes the progression of vertebrate neurogenesis.
Statistics
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PSSM-Id: 438790
Aligned: 60 rows
Threshold Bit Score: 145.433
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 30 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1O4X; Homo sapiens SOX-2 binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # ## #####   #  ##      ######  ##  #  ##      #          #           ######   
1O4X_B         6 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 85  human
Q6EJB7        33 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKT 112 zebrafish
RDD46063      22 ERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDADKRPFIDEAKRLRALHMKEHPDYKYRPRRKNKA 101 Trichoplax sp. H2
XP_007891059  48 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT 127 elephant shark
Q68FA4        38 ERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDSEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKT 117 tropical clawed...
P48433        44 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKT 123 chicken
NP_001122330  94 QRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKTLSDSDKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKA 173 vase tunicate
AIA23788      62 ERIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGMDWKMLTEDEKKPFIEEAKRLRALHMKEFPDYKYRPRRKAKA 141 sea walnut
Q9DDD7        50 DKVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDVEKRPFIDEAKRLRAVHMKEYPDYKYKPRRKTKA 129 zebrafish
XP_005990387  36 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKT 115 coelacanth

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