3BJE


Conserved Protein Domain Family
UP_TbUP-like

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cd00436: UP_TbUP-like 
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uridine phosphorylases similar to Trypanosoma brucei UP
Uridine phosphorylase (UP) catalyzes the reversible phosphorolysis of uracil ribosides and analogous compounds to their respective nucleobases and ribose 1-phosphate. Trypanosoma brucei UP has a high specificity for uracil-containing (deoxy)nucleosides, and may function as a dimer. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.
Statistics
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PSSM-Id: 350155
Aligned: 93 rows
Threshold Bit Score: 322.114
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3BJE: Trypanosoma brucei UP homodimer bound with ribose-1-phosphate and uracil in each of 2 active sites; contacts at 4A
  • Comment:the neighboring subunit contributes residue(s) to the protein-ligand interaction

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                ##  #                       #                       
3BJE_A        23 DLPIGKDGTTLHLKCKSDELA-DRIIFVGDPGRVDVISGYFDkd-sIRASRDH---REIRFATGTYk----------GTP 87  Trypanosoma brucei
OGO35070      18 DLPVDEAGRIYHLQIKPEQIA-PDILLVGDPGRAEFIGSRFLh--dLEVEHEH---RGLITITGTSditgdratiisPVK 91  Chloroflexi bac...
WP_011937475   8 DDLPIVNGRIYHLDLAPEELA-RDVILVGDPDRVPLLADELLa--eREADRFH---RGFRTITGVAre--------tEMR 73  Geobacter urani...
KPK02794      10 SDLPVFNNRIYHLDLAPEELA-PNIIIVGDPDRVPVIAEEFLg--dREVDRSH---RGLRTITGTSre--------tGQR 75  Nitrospira bact...
EAL50012       8 ATLPAKNGVIYHLQVTANDVA-NNIIMVGDPERVPKIAELVFdkskDIFRKDH---RGLCVMTGYTig--------dGMR 75  Entamoeba histo...
EDP76211       9 PDLPIINDKVYHLNLSPGELA-PDIIIVGDPHRVTFIARNFLr--gIDVNKEH---RGLRTVTGYTd---------wGQR 73  Hydrogenivirga ...
BAN37542       7 ATLPATGKNIYHLAISADDLA-DNIIVVGDPERVPKAAAVVLdqtkPIFRHDH---RGLVTMTGYTp---------nGVR 73  Entamoeba histo...
KKU05215      10 ELVIYPDGTLYHIDLKRADNIpPNIFLVGAAERADSFAKAFDs---VSFRHRNsarPEFYTVAGFYk----------NVP 76  Parcubacteria b...
OGN14872       9 QLIMSDDGTLYHIHLKKSDKVpPNILIMGADSRVDEVASHFDg---INFRHRNpkrSEFYTIAGTYk----------GVP 75  Candidatus Yano...
ALE02709       5 SEIVIIDERLYHLGIKKGDLA-QNIFIVGDPARAIRVSKEFDt---VDREISN---REYLTFTGTYk----------GIP 67  Candidatus Thio...
Feature 1               #                                                 # ####                 
3BJE_A        88 VTVISTGMGVDNIEIVLNEIHALKEYDMERGqwrhrkgdadapsagpffdpsTMKIIRLGTCGSPAEsvPPLALAVTRHA 167 Trypanosoma brucei
OGO35070      92 VTVTTSGMGTPSLEIVVNELVALNEIDFETRtrks--------------dfpRLHILRVGTSGALQAstKLGTLIITSYS 157 Chloroflexi bac...
WP_011937475  74 VSIVTSGIGAPSTEIVLNELAALNEIDFSTLtrke--------------sfePLNIVRVGTSGGLNPatPLGALVLTDYV 139 Geobacter urani...
KPK02794      76 VSVTTSGMGTPSLEIVLNELVALHEIDFSTMtrke--------------acePITIIRVGTSGGVQHdtPLGTLIVTDYA 141 Nitrospira bact...
EAL50012      76 LSVITHGMGTGSAEIVLNEVLALKAIDINSRtpie--------------vkePVNIIRIGTSGALQSstKLGTTIITKYS 141 Entamoeba histo...
EDP76211      74 VSITTSGMGTPSLEIVINEIVALHEIDFQSMerke--------------efpTLNVIRVGTSGGLQKdtELGTLVITEYA 139 Hydrogenivirga ...
BAN37542      74 MSIVTTGMGTGSTEIIINEILALKCIDIETRtvkn-------------tpkkPLNIIRVGTSGAVQEttELGTSIITKYA 140 Entamoeba histo...
KKU05215      77 MAVISTGIGPDNTEIVMNELHALFEYDHQKSewtn--------------vlpRVNIIRVGTCGASLKeiPAGALAISRYS 142 Parcubacteria b...
OGN14872      76 VAAMSIGIGLDNMETAINELHALFEYDHETNmwlpetv-------swpenkpKVNIVRVGTCGTSLPeiPAGALAISKYA 148 Candidatus Yano...
ALE02709      68 VSVIGTGIGTDNVEIALVEAFIEHEFNFESKtrnt--------------ncePMTLIRLGTSGGVQSdiAPGSQAIGSYA 133 Candidatus Thio...
Feature 1                                                                                        
3BJE_A       168 IGMDNTSLYYSagtretskdqqeirrivreqtglraidIYTSMAHPNITKSICAACdahnaatg-seadkqqYVIGTTAT 246 Trypanosoma brucei
OGO35070     158 IGLDNTGLLYEvpypdenckrleqeldhlirsamiadsRFYGKIHPYVSRAEPSIVaalmeaa---eifgvpARRGLTVS 234 Chloroflexi bac...
WP_011937475 140 IGLDNTGLFYDvplpdaacayleeqartvldraaqpgaRFGGTLAPYAARADRDLLtaleqea---aelgitHVRGITIS 216 Geobacter urani...
KPK02794     142 VGLDNTGLFYSpamydsgcelleqrtlecintaaartsRFKGKMIPYVSRADAEITaalqrea---drlgvrYKKGITVS 218 Nitrospira bact...
EAL50012     142 IGLDNTGLFYDippqspqivklenivddlfnkgaantcRYKGGIHAYASQPDPRMVdalvras---eknkllHKLGITTT 218 Entamoeba histo...
EDP76211     140 VGLDNTGLFYDapppdercvklegvvkdalegvisensRFKGRISPYASKAHPDVVraltesa---eelgvnFKRGVTVS 216 Hydrogenivirga ...
BAN37542     141 IGLDNTGMYYDvaltnpfgielekiadseinkaipegrRFKGRLHPYVSIPNKCVVdalieas---kkdnllYKVGITAS 217 Entamoeba histo...
KKU05215     143 IGLDNLGVYYPalnrdavaek--------iekeflktiVGKTNPLSYAAPAYAEVIvaleksaqdagekapmLISGITTA 214 Parcubacteria b...
OGN14872     149 IGLDNLGAYYPlpptrtysftgp---lariekkflktvVGKVNPITYCSLASPNAVyallesve-tlgenrnIVCGITTA 224 Candidatus Yano...
ALE02709     134 LGLDNTGIYFEepsndpvierieesakkilnksipsssRFKGKLIPYASKASIEVTnalenqa---lkngveYEVGITSS 210 Candidatus Thio...
Feature 1           #   # #                                  ####                      ##        
3BJE_A       247 ASGFYGCQGRRVGrfmkHLTVPNMVEELGSLKFnlsngvevvtNIEMETSAICYLSDMLG-YQAGAACVVVSKRVGekkm 325 Trypanosoma brucei
OGO35070     235 NSGFFAPQGRDIAr--vIPSVPGLTKVLSAYDArleg--qrieNMEMEASFLLHFLGGLG-HWAGAICPTIANRQEntf- 308 Chloroflexi bac...
WP_011937475 217 SPGFFAEQGRGVAr--iGSTVPGLLDALERLESgrln--lyveNLEMEAGVVLHFLGGLG-YRAAAVCAVINKRNEkaf- 290 Geobacter urani...
KPK02794     219 NSGFFANQGRDISr--vPLTVPDIDGVLASLDTgipg--lrveNMEMEASFLLHFMGCLG-YRAGVLCAVIDNRREdrf- 292 Nitrospira bact...
EAL50012     219 VPGFFNCQGRLLFe--eLPETVESIDKLLCFDFdgv----qpeNLEMEISILSLISSGLKwVRFGAMCMAIANRRLntf- 291 Entamoeba histo...
EDP76211     217 NSGFFANQGRSVSr--iPPTVPDIDVRLSRTDTgieg--lrfeNMEMEASFLLHFLYPLG-HRAGVVCPTIDKRPEekf- 290 Hydrogenivirga ...
BAN37542     218 AAGFFACQGRFVFee-nHPTIENLDSVLTHIGVdgi----kveNFEMEIAAIAQITQNFAwVRAGCICMAVANRRLntf- 291 Entamoeba histo...
KKU05215     215 SPGFFAPEGRNIGriktAFSLEQFVNLIYEFEAegl----kiiNHEMETSILFRLANEILgYRAGAICVVVDNLSSdefi 290 Parcubacteria b...
OGN14872     225 SPGFFGPEGRQIGristAFGPEEFRQIIQSFDVdgh----rivNHEMETSILFRLGYEQLgYNVGAICLVVDNLATdevm 300 Candidatus Yano...
ALE02709     211 SPGFYGPSSRYIEg--lKNTFPDIKGSLSKINIdgl----rvlNMEMESSLFFHLCSQMG-YRAGTICTVISGPTTsaa- 282 Candidatus Thio...
Feature 1                             
3BJE_A       326 flgdqLDAAMKRCIKIILEAL 346 Trypanosoma brucei
OGO35070     309 --dlhYQETIISATKVALQAL 327 Chloroflexi bacterium RBG_16_57_11
WP_011937475 291 --madYRRQVCAGARIALRAF 309 Geobacter uraniireducens
KPK02794     293 --aeqYIDYIKDAVLVSLRTL 311 Nitrospira bacterium SG8_35_4
EAL50012     292 --asdVESSLDPTVLTAVDAL 310 Entamoeba histolytica HM-1:IMSS
EDP76211     291 --lvnYQEKVKEASRVALNAL 309 Hydrogenivirga sp. 128-5-R1-1
BAN37542     292 --akpEKSSIEPTMKVAADAL 310 Entamoeba histolytica
KKU05215     291 -danfAKERTEKCISIALEAM 310 Parcubacteria bacterium GW2011_GWA2_45_30
OGN14872     301 -agdeAKERMNICIRVALESL 320 Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_43_22
ALE02709     283 --vidYDKAIGNTIRVGLKAM 301 Candidatus Thioglobus singularis PS1

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