1GWI,3B98,3RUK,1IZO,2FR7,1T93,2WM4,3P3L,2WIY,3EJB,1IO8,2WHW,3LD6,2Z36,2WH8,1PKF,2VE3,3K9V,1JPZ,1W0G,2Q9F,3DBG,1T2B,2QBN,3NC3,4KQ8,5T6Q,5YLW,1N97,1WIY,2RCH


Conserved Protein Domain Family
cytochrome_P450

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cd00302: cytochrome_P450 
Click on image for an interactive view with Cn3D
cytochrome P450 (CYP) superfamily
Cytochrome P450 (P450, CYP) is a large superfamily of heme-containing proteins that catalyze a variety of oxidative reactions of a large number of structurally different endogenous and exogenous compounds in organisms from all major domains of life. CYPs with > 40% sequence identity are members of the same family. There are approximately 2250 CYP families: mammals, insects, plants, fungi, bacteria, and archaea have around 18, 208, 277, 805, 591, and 14 families, respectively. CYPs bind their diverse ligands in a buried, hydrophobic active site, which is accessed through a substrate access channel formed by two flexible helices and their connecting loop. Their monooxygenase activity relies on the reductive scission of molecular oxygen bound to the P450 heme iron, and the delivery of two electrons to the heme iron during the catalytic cycle. CYPs use a variety of redox partners, such as the eukaryotic diflavin enzyme NADPH-cytochrome P450 oxidoreductase and the bacterial/mitochondrial NAD(P)H-ferredoxin reductase and ferredoxin partners. Some CYPs are naturally linked to their redox partners and others have evolved to bypass requirements for redox partners, and instead react directly with hydrogen peroxide or NAD(P)H to facilitate oxidative or reductive catalysis.
Statistics
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PSSM-Id: 410651
Aligned: 256 rows
Threshold Bit Score: 92.9627
Created: 6-Mar-2002
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindingchemical
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1IZO: Bacillus subtilis cytochrome P450 152a1 binds heme; contacts at 4A
  • Structure:3K9V: Rattus norvegicus mitochondrial P450 24a1 binds heme; contacts at 4A
  • Structure:2FR7: Rhodopseudomonas palustris CYP199A2 binds heme; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1GWI_B     30 GPLAAVElpg-----------------gvPVWAVTh--HAEAKALltdprlvkdinvwgawrrgeip------------- 77  Streptomyces coeli...
1IZO_A     34 SDLFQARll------------------gkNFICMTg--AEAAKVFydtdrfqrqnalpkrvq------------------ 75  Bacillus subtilis
2RCH_A     67 STVYRVNmppgaf-----------iaenpQVVALLd--GKSFPVLfdvdkvekkdlftgtymps---------------- 117 thale cress
CAP99838   56 LSLHQSKaia-----------------nrHLPIAFg--IDNAFTRtdnvh------------------------------ 86  Penicillium chryso...
P54781    103 GPLSCVSif------------------hkFVVIASt--RDLARKIlqsskfvkpcvvdvav------------------- 143 Saccharomyces cere...
CAK14981   63 GKLARHAdgswrryl------rlptfagdYSVLIG---VEEIRGLmqhprmgqgelvgdgrqf----------------- 116 Pseudomonas entomo...
EDR03646   48 YFQFRVLq--------------------hRVIALS---GEEARKMffveqglslgegyrilmgaapyl------------ 92  Laccaria bicolor S...
Q6UW02     66 GPVVSFWf--------------------gRRLVVSlgtVDVLKQHinpnktsdpfetmlk-------------------- 105 human
CAA76870   80 TPVTSFWw--------------------gKTHVVSf-cSPQAFKEsavfvnrpvelfvgfe------------------- 119 Suberites domuncula
EDR03638   58 WPFFTKRydflrnhfasgkryfqfhvlqhRVVAIS---GEEARKMffnekglgldegyrilmggapniddisvqpkegrv 134 Laccaria bicolor S...
Feature 1                           #   #      #                                              
1GWI_B     78 adwpliglanpgrsmltvdgaeHRRLRTLVAQALtvrrvehmRGRITELTDRLLDELPadggvv---------------- 141 Streptomyces coeli...
1IZO_A     76 ------kslfgvnaiqgmdgsaHIHRKMLFLSLMtpphqkrlAELMTEEWKAAVTRWEkadev----------------- 132 Bacillus subtilis
2RCH_A    118 ---teltggyrilsyldpsepkHEKLKNLLFFLLkssr-nriFPEFQATYSELFDSLEkelslkg--------------- 178 thale cress
CAP99838   87 ------------------asmfVEKVKPLINLSAe------qWHSVSEFARVTTSRWIehgfpgldrsccssspkdkqkp 142 Penicillium chryso...
P54781    144 -------kilrpcnwvfldgkaHTDYRKSLNGLFtkqalaqyLPSLEQIMDKYMDKFVrlsken---------------- 200 Saccharomyces cere...
CAK14981  117 ----lviadalgrmrlskerqdAKQKRNIIAHLVsgp--erfIQTMRQLSEQRVRRWWqgapt----------------- 173 Pseudomonas entomo...
EDR03646   93 edinvkpedgeiqdgdfteswmVRICKSPGHKTNily---lvLPALFEDVNRRMKDWGnegri----------------- 152 Laccaria bicolor S...
Q6UW02    106 --------sllryqsgggsvseNHMRKKLYENGVtdsl-ksnFALLLKLSEELLDKWLsypetq---------------- 160 human
CAA76870  120 -------plitpfsiqyandedWVQRSKCLYHTLkgddlksyFHHFVQIAQEEESLWSsytsdk---------------- 176 Suberites domuncula
EDR03638  135 kdaelvkrmavlfrkdrvvegtDRTDRRMMRLTFlh----pvLPVLFDDVHRRMNDWGnegti----------------- 193 Laccaria bicolor S...
Feature 1                       #                                                             
1GWI_B    142 ----dlkaaFAYPLPMYVVADLMgieea----------rlprLKVLFEKFFStqtp------------------------ 183 Streptomyces coeli...
1IZO_A    133 -----vlfeEAKEILCRVACYWAgvplke--------tevkeRADDFIDMVDafgavg---------------------- 177 Bacillus subtilis
2RCH_A    179 ---kadfggSSDGTAFNFLARAFygtnpad------tklkadAPGLITKWVLfnlhpllsiglprvi----eeplihtfs 245 thale cress
CAP99838  143 dcnrvnvasLAQILSLKVVLWLMfnkktqd------qtcdenLLDLAQSINRvwiss----------------------- 193 Penicillium chryso...
P54781    201 ----nyepqVFFHEMREILCALSlnsfcgnyitedqvrkiadDYYLVTAALElvnfpiii------------------py 258 Saccharomyces cere...
CAK14981  174 ----llvnaELSEFTAEVYLRSVmdlqg----------pvegVGQMLEEQVDllgqafa--------------------y 219 Pseudomonas entomo...
EDR03646  153 -----npfkEIYDLVFQMTVRMAtc---------------qeLAENKDDIERltqhywdleksatpvalllpwfpsrakk 212 Laccaria bicolor S...
Q6UW02    161 ---hvplsqHMLGFAMKSVTQMVmgstfed------dqevirFQKNHGTVWSeigkgfldgsl-------------dknm 218 human
CAA76870  177 ---evsltkEVFPMTIKGIARTCfgdifkd------enelskMAESYHVCWRtmeegvpea-----------------gs 230 Suberites domuncula
EDR03638  194 -----npfkELYDLVFQMTVRMGac---------------reLADDKDAIERltqhywnieknatptvlllpwlpspakk 253 Laccaria bicolor S...
Feature 1                                                                              ##  ## 
1GWI_B    184 --peevVATLTELASIMTdtvaakraapgddlt-----------------saliqasengdhltDAEIVSTLQLMVAAGH 244 Streptomyces coeli...
1IZO_A    178 prhwkgRRARPRAEEWIEvmiedaragllkttsgt-------------alhemafhtqedgsqlDSRMAAIELINVLRPI 244 Bacillus subtilis
2RCH_A    246 lppalvKSDYQRLYEFFLesageilve-----------------------------adklgisrEEATHNLLFATCFNTW 296 thale cress
CAP99838  194 -klkdtDNDIPRFEDDILlqtslv-----------------------------------nifgtHNSSEDNPLNLILPSF 237 Penicillium chryso...
P54781    259 tktwygKKTADMAMKIFEncaqmakdhiaaggkpvcvmdawcklmhdaknsndddsriyhreftNKEISEAVFTFLFASQ 338 Saccharomyces cere...
CAK14981  220 hkpahfNRRFDELKRQLVarigndpgllnstdyt---------------hrlnayidqhyqslqDEAFATGLNGAVLAGY 284 Pseudomonas entomo...
EDR03646  213 aqknstRALFTLLYKYVDlrrkapvpssd------------------------pidtliaygdnNEAIVGFIMGVIFAGV 268 Laccaria bicolor S...
Q6UW02    219 trkkqyEDALMQLESVLRniikerkgrnfsq--------------------hifidslvqgnlnDQQILEDSMIFSLASC 278 human
CAA76870  231 kretefLKHRRVLEDIIRriiqerkegedlqe-------------------lpfidsmlqnydsEDKIIADAISFMVGGF 291 Suberites domuncula
EDR03638  254 tqekatRELFTMLYNYVYlrrnaptpstd------------------------pidllvaygdsNEAIVSVVMSIIFAGV 309 Laccaria bicolor S...
Feature 1      ##  #                                                                          
1GWI_B    245 ETTISLIVNAVVNLSTHp-----eQRALVlsg--------------------------------------eaeWSAVVEE 281 Streptomyces coeli...
1IZO_A    245 VAISYFLVFSALALHEHp-----kYKEWLrsgn-------------------------------------sreREMFVQE 282 Bacillus subtilis
2RCH_A    297 GGMKILFPNMVKRIGRAgh----qVHNRLaeeirsviksngg-------------------eltmgaiekmelTKSVVYE 353 thale cress
CAP99838  238 ETMWRVVLRSFLEIRFGtgkevpeWRETMiafaekptkkqfdaasgapsslsipessnypsivdtrggqsspsANYIVRE 317 Penicillium chryso...
P54781    339 DASSSLACWLFQIVADRp-----dVLAKIreeqlavrnndms------------------telnldliekmkyTNMVIKE 395 Saccharomyces cere...
CAK14981  285 VAPFPSFLALVDELGRHp-----rYRQALrqelltkgddh-----------------------aayirrddtlLHACVHE 336 Pseudomonas entomo...
EDR03646  269 INTGAKSCWILLNLGANp-----eWKSKVteelktlvtnhtntlskep------lhkrlaaiplsaweeelpaLDLVIRE 337 Laccaria bicolor S...
Q6UW02    279 IITAKLCTWAICFLTTSe-----eVQKKLyeeinqvfgngp---------------------vtpekieqlryCQHVLCE 332 human
CAA76870  292 HTSGYMFTWMLWYLSSHp-----eSQDRLrteieretggerg------------------drlkeyslradtfLRQVQDE 348 Suberites domuncula
EDR03638  310 INTGAGSCWILLHLASHp-----qWKDKVinelkalvanhtngtskep------lhkqlaaiplhaweeelpaLELVIRE 378 Laccaria bicolor S...
Feature 1      #         # #                            #                                     
1GWI_B    282 TLRFSTptsHVLIRFAAEdvpvg------drviPAGDALIVSYGALGrderahgptADRFDLTRTsgn---------rhI 346 Streptomyces coeli...
1IZO_A    283 VRRYYPf-gPFLGALVKKdfvwn------ncefKKGTSVLLDLYGTNhdpr-lwdhPDEFRPERFaeree----nlfdmI 350 Bacillus subtilis
2RCH_A    354 CLRFEPp-vTAQYGRAKKdlviesh--daafkvKAGEMLYGYQPLATrdpk-ifdrADEFVPERFvgeege--kllrhvL 427 thale cress
CAP99838  318 SLRLYVp--TRHIHRAYQwdqgtgtsheimsadIEGCHTRSDIWGSD---------AERFNPNRWsaltpa---qgdafM 383 Penicillium chryso...
P54781    396 TLRYRPp-vLMVPYVVKKnfpvs-----pnytaPKGAMLIPTLYPALhdpe-vyenPDEFIPERWvegskas-eakknwL 467 Saccharomyces cere...
CAK14981  337 VLRLHPa-qPFLFRAASRdlmvn------ghfvRQGSELVADIYHVLrlpelwgedADAFRPERFqeaper---yrqpfL 406 Pseudomonas entomo...
EDR03646  338 TIRIAAs-gAALRRNLGKdilla------dttiKRGDFLTYSLSDVHlnan-iyadPTKFDPGRFtkgkednqketytyL 409 Laccaria bicolor S...
Q6UW02    333 TVRTAKl-tPVSAQLQDIegkid------rfiiPRETLVLYALGVVLqdpn-twpsPHKFDPDRFddelvm---ktfssL 401 human
CAA76870  349 TIRLSTl-aPWAARYSDKkvtvc------gytiPAKTPMIHALGVGLknkt-vwenTDSWDPDRFspngrr--gndfcpF 418 Suberites domuncula
EDR03638  379 TVRLTMs-mTSLRRNLGKdipla------dtiiKKGDFLAYCNGDAHmnpn-iytdPEKFDPERYsegreedrketfayL 450 Laccaria bicolor S...
Feature 1     ###           #####   ##                                            
1GWI_B    347 SFGHGp--------HVCPG-AALSRMEAGVALPALYARfphldlavpaAELRNkpvv--tqnDLFELP 403 Streptomyces coelicolor A3(2)
1IZO_A    351 PQGGGhae----kgHRCPG-EGITIEVMKASLDFLVHQieyd---vpeQSLHYslar--mpsLPESGF 408 Bacillus subtilis
2RCH_A    428 WSNGPetetptvgnKQCAG-KDFVVLVARLFVIEIFRRyds-----fdIEVGTsp------lGSSVNF 483 thale cress
CAP99838  384 PFGCPp--------FECPAkPTFGPRMIGVLVGSLLTAvggre-rlgtWILDCedegvlehlSSGKRL 442 Penicillium chrysogenum Wiscon...
P54781    468 VFGCGp--------HVCLG-QTYVMITFAALLGKFALYtdfh---htvTPLSEkikv-fatiFPKDDL 522 Saccharomyces cerevisiae S288C
CAK14981  407 AYSSGp--------NNCTG-QMFSRYSLKVLLAEMVRAgdwe---stdEPLEHhfh----faLAMSRP 458 Pseudomonas entomophila L48
EDR03646  410 GWGVGr--------HPCAG-MRIAKLEMKLILAMFLVGyeye---lvdSRGNFpk------eLPLQDR 459 Laccaria bicolor S238N-H82
Q6UW02    402 GFSGT---------QECPE-LRFAYMVTTVLLSVLVKRlhllsvegqvIETKYe--------LVTSSR 451 human
CAA76870  419 GVHSR---------RKCPG-YLFSYFEVGVFASILLSRfeivpvegqtVIQVHg--------LVTEPK 468 Suberites domuncula
EDR03638  451 AWGVGr--------HPCVG-VRIAKMEMKLLTALILLGyeyelvdgagNRLEK---------VPLQDR 500 Laccaria bicolor S238N-H82

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