4DQ1


Conserved Protein Domain Family
thym_sym

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TIGR03284: thym_sym 
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thymidylate synthase
Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 213790
Aligned: 17 rows
Threshold Bit Score: 538.951
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4DQ1_A        11 AYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNNNIWNE 90  Staphylococcus ...
WP_002288391  13 AYLDLGRKLLEEGHRKEDRTGTGTLSLFGYQMRFDLQKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLQNKNHIWDE 92  Enterococcus fa...
WP_003700096   7 PYLQLIRDILEKGHEKSDRTGTGTKSLFGYQMRFNLAEGFPLLTTKKVPFGLIKSELLWFLRGDTNIRFLLEHNNHIWDE 86  Lactobacillus s...
WP_002212612   3 AYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPLLTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDE 82  Neisseria menin...
WP_011165585   3 QYHDLIKTVLEHGVKKEDRTGTGTISMFGYQMRYNLQEGFPLLTTKKLHTRSIFHELLWFLKGETNIKYLHDNKVTIWDE 82  Bdellovibrio ba...
Q2W7P4         3 QYLDLLRRIQAEGVTKTDRTGTGTTSVFGHQMRFDLSRGFPLVTTKKLHTRSIFVELLWFLRGDTNIGWLKDNKVSIWDE 82  Magnetospirillu...
WP_011159033   3 QYQDLLERILSDGAEKHDRTGTGTLSVFGHQMRFDLAAGFPMLTTKRLPLKAIVHELLWFLQGDTNIKYLHDHGVTIWDE 82  Rhodopseudomona...
WP_011645489   3 QYQALLRDILENGHKRGDRTGVGTIGVFGRQMRFDLSEGFPMVTTKRLHLRSIIVELLWFLRGDTNIAYLKENGVSIWDE 82  Hyphomonas nept...
WP_004920124   3 TYLDLLQHILDNGGDKGDRTGTGTRSVFGHQMRFDLSQGFPLLTTKKVHFRSIVIELLWFLKGDTNVQYLKDHKVSIWDE 82  Acinetobacter
WP_010894778   3 QYLELLNDVLVHGIQKPDRTGTGTRSVFGWQMRFDLSQGFPLVTTKKLHLRSIIHELLWFLRGETNIAYLKKHQVHIWDE 82  Xylella fastidiosa
4DQ1_A        91 WAFENYIKSDEYNGPDMTDFGHRALSDPEfneqykeqmkqfkqrilEDDTFAKQFGDLGNVYGKQWRDWVDKDG------ 164 Staphylococcus ...
WP_002288391  93 WAFERYIKSPDYNGPDMTDFGHRCLTDPEfneeykkqsklfcekilTDDSFAETYGDLGHIYGYQWRHWETKDG------ 166 Enterococcus fa...
WP_003700096  87 WAFKNWVESDEYHGPDMTNFGLRAQEDDNfnkvyqdekkkfcqkivEDQEFANKFGNLGDVYGAQWRHWQTRNG------ 160 Lactobacillus s...
WP_002212612  83 WADE--------------------------------------------------NGDLGPVYGYQWRNWPAPDG------ 106 Neisseria menin...
WP_011165585  83 WADE--------------------------------------------------NGNLGPVYGKQWRSWETADG------ 106 Bdellovibrio ba...
Q2W7P4        83 WA--------------------------------------------------DANGDLGPVYGKQWRSWACPDG------ 106 Magnetospirillu...
WP_011159033  83 WA--------------------------------------------------DANGDLGPVYGAQWRSWPTADG------ 106 Rhodopseudomona...
WP_011645489  83 WADE--------------------------------------------------NGDLGPVYGKQWRSWATPNG------ 106 Hyphomonas nept...
WP_004920124  83 WA------------------------TAE-----------------QTARFGRPEGELGPVYGHQWRNFGATQNsdgsyk 121 Acinetobacter
WP_010894778  83 WA--------------------------------------------------DATGELGPVYGKQWRRWAGADG------ 106 Xylella fastidiosa
4DQ1_A       165 -NHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLT 243 Staphylococcus ...
WP_002288391 167 -GFIDQIKQVIEAIKKTPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVQEGRLSCQLYQRSGDVFLGVPFNIASYALLT 245 Enterococcus fa...
WP_003700096 161 -ETIDQIKDVIETIKNNPDSRRMIVTAWNPEDVPLSALPPCHTLFQFYVNDGKLSCQLYQRSADVFLGVPFNIASYALLT 239 Lactobacillus s...
WP_002212612 107 -RHIDQIANVLEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLSCQLYQRSADIFLGVPFNIASYALLT 185 Neisseria menin...
WP_011165585 107 -RTIDQITNVVEQIKKNPNSRRMLVVAFNPGDVDKMALPPCHAFFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLT 185 Bdellovibrio ba...
Q2W7P4       107 -STVDQITQVVEMIRKSPDSRRLIVSAWNPADIESMALPPCHCLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLT 185 Magnetospirillu...
WP_011159033 107 -GSIDQIANVVEMIKRNPDSRRLMVTAWNPADVEKMALPPCHCLFQFYVANGKLSCQLYQRSADVFLGVPFNIASYALLT 185 Rhodopseudomona...
WP_011645489 107 -EAIDQIQWVLNEIRTNPNSRRLIVSAWNPADVNDMALPPCHCLFQFNVMDGKLNCQLYQRSADVFLGVPFNIASYALLT 185 Hyphomonas nept...
WP_004920124 122 nDGFDQIKWLINEIKTNPNSRRLIVSGWNPNEAGQVALPPCHTLFQFFVQDGKLSCQLYQRSADVFLGVPFNIASYALLT 201 Acinetobacter
WP_010894778 107 -HEIDQIRWLLEEIKRNPDSRRLVISAWNVADLPQMALVPCHALFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLT 185 Xylella fastidiosa
4DQ1_A       244 HLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIKAPIAV 321 Staphylococcus a...
WP_002288391 246 HLIAHETGLAVGEFVHTLGDAHLYINHIEQMKEQLSREIRAFPTLVLNQEkQSVFDFEMEDIQLEGYDPHPAIKAPIAV 324 Enterococcus fae...
WP_003700096 240 HMIARETGLEVGEFVHTLGDAHIYLNHLDQVNEQLQRKPNDAPTLWLNPEkKNIMDFEMEDIKVKNYHSHSAIKAPVAV 318 Lactobacillus sa...
WP_002212612 186 MMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAALQLEREPRALPVMKINPEvKDLFSFKFEDFELEGYDPHPHIKAAVSV 264 Neisseria mening...
WP_011165585 186 HMIAQVCDLEVGDFVHTLGDAHLYLNHLEQANLQLTREFRPLPQLKLNPAkKDLFDFTYEDIEIIGYDPHPAIKAEVAV 264 Bdellovibrio bac...
Q2W7P4       186 HMVAQVTGLEVGAFVHTFGDAHLYSNHMEQAALQLSRAPLPLPRLELNPEvKDLFAFTMDDIKVVDYQCHAHIAAPVAV 264 Magnetospirillum...
WP_011159033 186 LMVAQVTGLKPGEFVHTLGDAHLYSNHLEQARLQLTRAPRALPVMTINPAvKDIFGFRYEDFTLTGYDPHPHIKAEVAV 264 Rhodopseudomonas...
WP_011645489 186 MMMARATGLQPGEFVHTFGDAHLYLNHLEQAELQLTREPRDLPTIHMNPDkADLFGWEYEDFRVDGYAPHPHIKAPVAV 264 Hyphomonas neptu...
WP_004920124 202 HMIAQVCGLGVGDFVWTGGDTHLYANHFEQAQLQLTREPLPLCQLKLNPEiTDLFDFKFEDIEIVDYQSHPAIKAPVAV 280 Acinetobacter
WP_010894778 186 HMLAQVTGLAVGDFVHTLGDAHLYANHVEQASVQLERVPRPQPVLMLNPAvTDLFDFTYDDIVIEGYDPYPAIKAPVAV 264 Xylella fastidiosa
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