Conserved Protein Domain Family
DapF

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TIGR00652: DapF 
diaminopimelate epimerase
[Amino acid biosynthesis, Aspartate family]
Statistics
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PSSM-Id: 273197
Aligned: 12 rows
Threshold Bit Score: 272.285
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q58519         1 MEFTKMHALGNDYIVINEFD---GEKVKEee--kAEFSRKICRRGFSVGADGVIFIQKp--------------TSDEYDV 61  Methanocaldococ...
P44859         1 MQFSKMHGLGNDFVVVDGVT---QNVFFT-----PETIRRLANRHCGIGFDQLLIVEAp--------------YDPELDF 58  Haemophilus inf...
O84437        10 CRYLLYSGAGNSFILGESMP----------------SLEDVLFLCQEEMVDGFLCVE----------------SSEIADA 57  Chlamydia trach...
Q9Z833        10 SKYFIYSGAGNRFLLGETLP----------------EVEDVRFLCQETRVDGFLYLK----------------PSSCADA 57  Chlamydia pneum...
P74667         3 LSFSKYHGLGNDFILVDNRQ---STEPCLt----PDQAQQLCDRHFGIGADGVIFALP---------------GQGGTDY 60  Synechocystis s...
O32114         4 FRFTKMHGLGNSYIYVNQFE---EQLPEEk---lSEIAIQVSSVYTGIGSDGMILICP----------------SDQAPV 61  Bacillus subtil...
O29511         3 IAFTKMHGNGNDFVLIDEFE---GVIVGEee--kPRFVRAVCHRNFGVGADGALFVQP----------------SQKADV 61  Archaeoglobus f...
O67693         1 MEFWKLQGSGNDFVVIDDRDeklESFLKErgvskEDFVRKVCAFHTGVGADGLILIKNp--------------DNPENDF 66  Aquifex aeolicu...
Q9ZDB7         5 INFVKMHGLGNDFVIVNKRDl--ATSYNLs-----HLAKNMADRHTGIGCDQCIIYE-----------------ENNDFY 60  Rickettsia prow...
O33231         1 MIFAKGHGTQNDFVLLPDVD---AELVLT-----AARVAALCDRRKGLGADGVLRVTTagaaqavgvldslpeGVRVTDW 72  Mycobacterium t...
O25290         1 MVFYKYSGSGNDFLIVQSFK---KKDFSN-------LAKQVCHRHEGFGADGLVVVLP----------------SKDYDY 54  Helicobacter py...
WP_001160654   1 MQFSKMHGLGNDFMVVDAVT---QNVFFS-----PELIRRLADRHLGVGFDQLLVVEPp--------------YDPELDF 58  Enterobacteriaceae
Q58519        62 RFRIFNSDGSEAEMCGNGIRCFSKYVYERIMK-KNPLKVETKGGLRVSEMEIEGdevkKIKVYMGVPKFKLKDIPMV--V 138 Methanocaldococ...
P44859        59 HYRIFNADGSEVSQCGNGARCFARFVTLKGLTnKKDISVSTQKGNMVLTVKDDN----QIRVNMGEPIWEPAKIPFT--A 132 Haemophilus inf...
O84437        58 KLTVFNSDGSIASMCGNGLRCAMAHVAQCFGL--EDVSIETERGVYQGKFFSMN----RVLVDMTLPDWKKAERKLT--H 129 Chlamydia trach...
Q9Z833        58 QLIIFNSDGSRPTMCGNGLRCAIAHLASQKGK--SDISVSTDSGLYSGYFYSWD----RVLVDMTLADWRASVHRLE--S 129 Chlamydia pneum...
P74667        61 TMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVeEKTYRIHTLAGVITPQLLADG----QVKVDMGEPQLLAELIPTT--L 134 Synechocystis s...
O32114        62 KMRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVeETSFLIETLSGLVKAEVQVENgkvnVVTVDMGEPRLTKSELPMLdgG 141 Bacillus subtil...
O29511        62 RFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAg-ERLRVETLAGILELEVKRENg--wWVKVDMGKPKFGREEIPAKtdV 138 Archaeoglobus f...
O67693        67 KWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVg-NKVRFETLAGVIKAEVYENGr---KVKVQLTPP-SKPEEKTLT--V 139 Aquifex aeolicu...
Q9ZDB7        61 TMIIYNIDGSSAKLCGNAIRCLAKLIYLDTGK--QNITVMVGKKKLLCNVKAAN----KISVNVGNVSFNETWMPSRdkI 134 Rickettsia prow...
O33231        73 YMDYRNADGSAAQMCGNGVRVFAHYLRASGLEvRDEFVVGSLAGPRPVTCHHVEaayaDVSVDMGKANRLGAGEAVVg-- 150 Mycobacterium t...
O25290        55 EWDFYNSDGSKAGMCGNASRCVGLFAYQHAIAs-KNHVFLAGKREISICIEEPN----IIESNLGNY-KILDVIPALrcE 128 Helicobacter py...
WP_001160654  59 HYRIFNADGSEVAQCGNGARCFARFVRLKGLTnKRDIRVSTANGRMVLTVTDDD----LVRVNMGEPNFEPSAVPFR--A 132 Enterobacteriaceae
Q58519       139 DGYKEdDEFLNGELklknpylpkVklsVVNVGNPHAVIFVEDnnidldFVREHLDVIGKEIEHHEAF-PERINVHFVKVL 217 Methanocaldococ...
P44859       133 NKFEK-NYILRTDIq-------tVlcgAVSMGNPHCVVQVDD------IQTANVEQLGPLLESHERF-PERVNAGFMQII 197 Haemophilus inf...
O84437       130 VLPGMpEQVFF-----------------IDTGVPHVVVFVSD------LSKVPVQEWGSFLRYHEDFaPEGVNVDFVQRK 186 Chlamydia trach...
Q9Z833       130 RPDPLpKEVVC-----------------IHTGVPHAVVILPE------ISTLDLSILGPFLRYHQTFsPDGVNVNFVQIL 186 Chlamydia pneum...
P74667       135 APAGEkVVDLPLAVag-----qtWavtCVSMGNPHCLTFVDD------VDSLNLTEIGPLFEHHPQF-SQRTNTEFIQVL 202 Synechocystis s...
O32114       142 EEHTInETMAFGEVe--------LtgtAVSMGNPHIVFPIAD------IEQAPLTTLGPVIEKDPRF-PEGINVEFVETV 206 Bacillus subtil...
O29511       139 WGYEVeHDGRKFRI---------Y---AANTGVPHVAVFVDS------L-DFDIVPLARKIRYSEIF-PEGTNVNFAKVD 198 Archaeoglobus f...
O67693       140 DGEEViGVF-------------------INTGVPHFVVPVED------VEKVNVIKLGRAIRFHEEFqPKGTNVNFVQPV 194 Aquifex aeolicu...
Q9ZDB7       135 WKFAErYMLDLKEM---------L---CVDIGNPHLIIFSK-------LEPQDKTIIGQKLQAKELF-ADGVNVNFAEVK 194 Rickettsia prow...
O33231       151 --GRR-FHGLA-----------------VDVGNPHLACVDSQl----tVDGLAALDVGAPVSFDGAQfPDGVNVEVLTAP 206 Mycobacterium t...
O25290       129 KFFSSgSVLEHIPTf-----------yLIDTGVPHLVGFVEN------KEGLNSLNTLELRALRHEF-NANINIAFIENK 190 Helicobacter py...
WP_001160654 133 NKAEK-TYIMRAAEq-------tIlcgVVSMGNPHCVIQVDD------VDTAAVETLGPVLESHERF-PERANIGFMQVV 197 Enterobacteriaceae
Q58519       218 NPNEIRIVTWERG-AGYTTACGTGTTASVIMAHK--LGKTNNR-VLAHLDGG-DLEIEIKDD--GVYMIGDAVMVYDAKL 290 Methanocaldococ...
P44859       198 NKEHIKLRVYERG-AGETQACGSGACAAVAVGIM--QGLLNNN-VQVDLPGG-SLMIEWNGVghPLYMTGEATHIYDGFI 272 Haemophilus inf...
O84437       187 KDDLLLVYTYERGcERETLSCGTGMLASALVAADifSLGQDFS-IAVCSRSR-NLIKIFSEKg-KVFLEGPVSLLNRSEN 263 Chlamydia trach...
Q9Z833       187 GHCQLRVRTYERGvEGETAACGTGALASALVVSN--SYGWKES-IQIHTWGG-ELMTVSQNRg-RVYLQGSVTRDL---- 257 Chlamydia pneum...
P74667       203 GSDRLKMRVWERG-AGITLACGTGACATVVAAVL--TGRGDRR-CTVELPGG-NLEIEWSAQdnRLYMTGPAQRVFSGQA 277 Synechocystis s...
O32114       207 NEQELHFRVWERG-SGITQACGTGACAAAVASVLngVSKRNQD-ITVHLAGG-DLVINWKDNg-HVMMTGPAETVCEGVY 282 Bacillus subtil...
O29511       199 G-DTITVRTYERGvEGETLSCGTGSVAVAAIANR--LGLTGSK-VDVVTKGG-LLKIELTED--TAYMTGGASRVFDGIL 271 Archaeoglobus f...
O67693       195 SEDTIKVRTYERGvESETLACGTGATACAIVSYL--KGLVKKKpVNVLTRSGeVLTIDFSEDlkEVFLTGSVYKVFEGRL 272 Aquifex aeolicu...
Q9ZDB7       195 D-NKIYLSVWERG-AGLTLACGSGACASFAAGLK--LGFVHSP-STVVFEYG-NLIMR-EEDg-NIIMQGAATFVMRGEY 266 Rickettsia prow...
O33231       207 VDGAVWMRVHERG-VGETRSCGTGTVAAAVAALA--AVGSPTGtLTVHVPGG-EVVVTVTDAt--SFLRGPSVLVARGDL 280 Mycobacterium t...
O25290       191 E--TIFLQTYERGvEDFTLACGTGMAAVFIAARI--FYNTPKKaALIPKSNE-SLELSLKNDg--IFYKGAVRYIGMSVL 263 Helicobacter py...
WP_001160654 198 KREHIRLRVYERG-AGETQACGSGACAAVAVGIQ--QGLLAEE-VRVELPGG-RLDIAWKGPghPLYMTGPAVHVYDGFI 272 Enterobacteriaceae
Q58519       291 IN 292 Methanocaldococcus jannaschii DSM 2661
P44859       273 TL 274 Haemophilus influenzae Rd KW20
O84437       264 FG 265 Chlamydia trachomatis D/UW-3/CX
Q9Z833           --     Chlamydia pneumoniae
P74667       278 EI 279 Synechocystis sp. PCC 6803 substr. Kazusa
O32114       283 FL 284 Bacillus subtilis subsp. subtilis str. 168
O29511       272 RL 273 Archaeoglobus fulgidus DSM 4304
O67693       273 SE 274 Aquifex aeolicus VF5
Q9ZDB7       267 YY 268 Rickettsia prowazekii str. Madrid E
O33231       281 AD 282 Mycobacterium tuberculosis
O25290       264 GM 265 Helicobacter pylori 26695
WP_001160654 273 HL 274 Enterobacteriaceae
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