5MXN


Conserved Protein Domain Family
T6SS_VipA

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pfam05591: T6SS_VipA 
Type VI secretion system, VipA, VC_A0107 or Hcp2
T6SSs are toxin delivery systems. It is a multiprotein complex requiring numerous core proteins (Tss proteins) including cytoplasmic, transmembrane, and outer membrane components. The needle or tube apparatus is comprised of a phage-like complex, similar to the T4 contractile bacteriophage tail, which is thought to be anchored to the membrane by a trans-envelope complex. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2, TssB and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system. VipA and VipB (TssB and TssC) proteins were shown to form a cog-wheel like tubular structure in V. cholerae that was noticed to resemble T4 phage gp18 polysheath. Two beta-strands of VipA and four beta-strands of VipB intertwine forming the middle layer of the sheath. The sheath assembles around an inner Hcp tube and is attached to a structure called a baseplate that spans the bacterial membranes. Importantly, VipA/VipB sheath was shown to form a long contractile organelle in V. cholerae and in E. coli, suggesting that sheath contraction powers the secretion.
Statistics
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PSSM-Id: 428529
Aligned: 97 rows
Threshold Bit Score: 144.919
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MXN_c                4 GSVAPKERINIKYIPATGDAQAEVaevELPLKTLVVGDFKGHAEQTPLEERATVTVDKNNFEAVMRESELKITATVKNKL 83  Vibrio c...
wkYale:SALWKB2_1366   6 QNEVPPARVNIKLDLHTGGAKKQV---ELPLRLLVAGDFSFKESDTPLAEREKVSINKNNFDAVLAEMNPAVKLSVPNAL 82 
jgi:Rmet_0625         6 QNEVPKARVNIKLDLHTGGAQKKV---ELPLKLLVMGDYSNGQETRALAEREKVSINKNNFNSVLADFNPKARIAVESTL 82 
wugsc:KPN_01322       6 QNEVPRARINLKLSLHTGGAQKKV---ELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPNTL 82 
goetting:EBL_c11480   6 QNEVPKARINLKLDLHTGGASKKT---ELPLKLLIAGDFSNGQESAPLPERKKVNLNKNNIDAVLFEYSPKVNLTVKNTL 82 
Q7N240                6 QNEIPKSRINIKLDLHTGGAQKKV---ELPLKLLVMGDYSNGQEHLPLGERKKVAINKNNFDSVLAEFSPAINLTVKNTL 82  Photorha...
Q3A0Q8                6 QKEIPKARINLALDVETGGHQKKT---ELPLKMLVMGDFSNGKTKGKIADRQRININKNNFESVMADLAPSVRFDVPNLL 82  Pelobact...
jgi:Hhal_0161        19 QQEVPKSRVNITLDVDTGDARKTL---ELPLKMLVLGDFSNGQASGRLAERERVPIDRDHLDAVLGDLSPSLQVTVPDTF 95 
WP_013662785          6 QSEIPRARVNIALDLDSGSGKKKK---ELPMKLLVMGDFSNGQSEGELSERERVNINGNNLEKVIANMAPKMEFAVPNRI 82  Marinomo...
WP_038833996          7 QNEIPKARINIKLDLHTGGAQKKV---ELPLKLLVMGDYSNGQEQRPLSEREKLNINKNNFNSVLAEFQPSLKLAVPDTL 83  Yersinia...
5MXN_c               84 TDdeNAELPVELNFKSLADFAPDAVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLLNSEESREKLLAEL 159 Vibrio cholerae
wkYale:SALWKB2_1366  83 ADd-NSEIPVNLEFKSMKDFHPEQIVQQVPELKSLLAMRNLLRDLKSNILDNAVLRKELEKILQDKNLSDELRKEL 157
jgi:Rmet_0625        83 ARd-GSELPVDLDFKSMDDFKPEVVASRVPELRALMAARNLLRDLKSNLLDNAMFRRELEKILKDPGLSERLRADL 157
wugsc:KPN_01322      83 AGn-GEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEM 157
goetting:EBL_c11480  83 AGd-GSEDNISLIFRSMKDFSPEQVSRQIPQLKAMLSMRNLLRDLKANLLDNQAFRKELEKILLDPALSAELREEL 157
Q7N240               83 AGd-GSEENIALIFRQIKDFEPEQIARQIPQLRALLSMRHLLRDLRSNLLDNTTFRRELEHILQDQALSDELRAEL 157 Photorhabdus...
Q3A0Q8               83 AKd-GSDFSIDLAFQSMKDFRPDSVAHQIPEMHSLMAMRNLLKDLKSNLLDNAKFRKKLEKIVSNQPQLEGLKQQL 157 Pelobacter c...
jgi:Hhal_0161        96 RGd-GSQIRVALKIDGFHAFSPEAVARQIPQVNNLLAMRNLLKDLKSNVLDNARFRRELERIVQNQKELEGVMGEL 170
WP_013662785         83 KEg-AGDIAVSLTAKRFDSFHPEQVAAQIPELSDLLSMRNLLKDLKSNLLDNATLRKEVERILNTQPDMDALKTEL 157 Marinomonas ...
WP_038833996         84 AGd-NTDTAVSLTFNDMKDFEPENVARQIPQLRALLAMRNLLRDLKSNLLDNATFRRELENILKDDALSDELRAEL 158 Yersinia pestis
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