Conserved Protein Domain Family
Herpes_LMP1

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pfam05297: Herpes_LMP1 
Herpesvirus latent membrane protein 1 (LMP1)
This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys
Statistics
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PSSM-Id: 283060
Aligned: 2 rows
Threshold Bit Score: 656.716
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P03230   1 MEHDLERGPPGPRRPPRGPPLSSSLGLALLLLLLALLFWLYIVMSDWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPL 80  Epstein-Barr virus (s...
Q1HVB3   1 MEHDLERGPPGPRRPPRGPPLSSSLGLALLLLLLALLFWLYIVMSDWTGGALLVLYSFALILIIIILIIFIFRRDLLCPL 80  Epstein-barr virus st...
P03230  81 GALCILLLMITLLLIALWNLHGQALFLGIVLFIFGCLLVLGIWIYLLEMLWRLGATIWQLLAFFLAFFLDLILLIIALYL 160 Epstein-Barr virus (s...
Q1HVB3  81 GALCLLLLMITLLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLLEILWRLGATIWQLLAFFLAFFLDLILLIIALYL 160 Epstein-barr virus st...
P03230 161 QQNWWTLLVDLLWLLLFLAILIWMYYHGQRHSDEHHHDDSLPHPQQATDDSGHESDSNSNEGRHHLLVSGAGDGPPLCSQ 240 Epstein-Barr virus (s...
Q1HVB3 161 QQNWWTLLVDLLWLLLFLAILIWMYYHGQRHSDEHHHDDSLPHPQQATDDSGHESDSNSNEGRHHLLVTGAGDGPPLCSQ 240 Epstein-barr virus st...
P03230 241 NLGAPGGGPDNGPQDPDNTDDNGPQDPDNTDDNGphdplPQDPDNTDDNGPQDPDNTDDNGPHDPLPHSPSDSAGNDGGP 320 Epstein-Barr virus (s...
Q1HVB3 241 NLGAPGGGPDNGPQDPDNTDDNGPQDPDNTDDNG-----PQDPDNTDDNGPQDPDNTADNGPHDPLPHNPSDSAGNDGGP 315 Epstein-barr virus st...
P03230 321 PQLTEEVENKGGDQGPPLMTDGggghshdsghGGGDPHLPTLLLGSSGSGGDDDDPHGPVQLSYYD 386 Epstein-Barr virus (strain B95-8)
Q1HVB3 316 PNLTEEVENKGGDRGPPSMTDG----------GGGDPHLPTLLLGTSGSGGDDDDPHGPVQLSYYD 371 Epstein-barr virus strain ag876
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