2YI8


Conserved Protein Domain Family
Birna_RdRp_palm

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pfam04197: Birna_RdRp_palm 
Birnavirus RNA dependent RNA polymerase (VP1), palm domain
Birnaviruses are dsRNA viruses. This entry corresponds to the "palm" domain of the RNA dependent RNA polymerase, also known as VP1. All of the birnavirus VP1 proteins contain conserved RdRp motifs that reside in the catalytic "palm" domain of all classes of polymerases. However, the birnavirus RdRps lack the highly conserved Gly-Asp-Asp (GDD) sequence, a component of the proposed catalytic site of this enzyme family that exists in the conserved motif VI of the palm domain of other RdRps. The catalytic motifs are arranged in a permuted order in sequence.
Statistics
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PSSM-Id: 461223
Aligned: 3 rows
Threshold Bit Score: 1001.03
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YI8_C   1 MSDIFNSPQNKASILTALM-KSTTGD-VEDVLIPKRFRPAKDPLDSPQAAAQFLKDNKYRILRPRAIPTMVELETDAALP 78  Infectious pancreatic...
Q82630   1 MSDVFNSPQARSKISAAFGiKPTAGQdVEELLIPKVWVPPEDPLASPSRLAKFLRENGYKILQPRSLPENEEYETDQILP 80  Infectious bursal dis...
Q8AZL8   1 MSDVFNTPHARRTITQALG-LTNVSDrTQDWLLPEPWNPPMDPIKNSQEAAEYLQRNQYRMLKPRAIPENTPLDTSELFP 79  Blotched snakehead virus
2YI8_C  79 RLRQM--VEDGKLKDTVSVPEGTTAFYPKYYPFHKPDHDEVGTFgAPDITLLKQLTFFLLE-----NDFPTGPETLRQvr 151 Infectious pancreatic...
Q82630  81 DLAWMrqIEGPVLKPTLSLPIGDQEYFPKYYPTHRPSKEKPNAY-PPDIALLKQMIYLFLQvpeatDNLKDEVTLLTQ-- 157 Infectious bursal dis...
Q8AZL8  80 HLAEF--VGSGAFGTSTLVPAGSTEYIPRYYPTHKPEHNKPTPFgHYDVALLKQMTYQLTNg---kDNPEEEGTTFRQfr 154 Blotched snakehead virus
2YI8_C 152 eAIATLQYGSGSYSGQLNRLLAMKGVATGRNPNKTPKTVGYTNEQLAKLLEQTLPINTPKHED---PDLRWAPSWLINYT 228 Infectious pancreatic...
Q82630 158 -NIRDKAYGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPVGPPGEDDkpwVPLTRVPSRMLVLT 236 Infectious bursal dis...
Q8AZL8 155 dTIVEQQYGSGTSQGQLARLVAMKEVATGRNPNKSPKELGLSMEEIATMLEQTLPIGQPGGDEg-wPSLTTTLSELLNPA 233 Blotched snakehead virus
2YI8_C 229 GDLSTD---KSYLPHVTIKSSAGLPYIGKTKGDTTAEALVLADSFIRDLGR-----AATSADPEAGVKKTITDFWYLSCG 300 Infectious pancreatic...
Q82630 237 GDVDGEfevEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQFLRELSAllkqgAGTKGSNKKKLLSMLSDYWYLSCG 316 Infectious bursal dis...
Q8AZL8 234 EGM-------DYLPHITMKSSSGLPFIGKTKGETVTSALAICDTFLREVSEcvkegA--MASDNQKLQKLLQDYWYLSCG 304 Blotched snakehead virus
2YI8_C 301 LLFPKGERYTQVDWDKKTRNIWSAPYPTHLLLSMVSTPVMNESKLNITNTQ-TPSLYGFSPFHGGMDRIMTIIrdsLDND 379 Infectious pancreatic...
Q82630 317 LLFPKAERYDKSTCCTKTRNKWSAQSSTHLMISMITWPVMSNSPNNVLNIEgCPSLYKFNPFRGGLNRIVEWI---MAPD 393 Infectious bursal dis...
Q8AZL8 305 LLFPKAERYEKKAWLTKTRNIWSAPFPTHLLLSTISWPIMNSSKNNILNVPeCVSLYGFNPFSGGMDAVVTNIl--AQPD 382 Blotched snakehead virus
2YI8_C 380 EDLVMIYADNIYILQDNTWYSIDLEKGEANCTPQHMQAMMYYLLTRGWTnEDGSPRYNPTWATFAMNVAPSMVVDSSCLL 459 Infectious pancreatic...
Q82630 394 EPKALVYADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWS-DNGDPMFNQTWATFAMNIAPALVVDSSCLI 472 Infectious bursal dis...
Q8AZL8 383 ETLFLIYADNIYIYMDRTWFSIDLEKGEANATPEHAQAVSYYLLTRGWTqDDGSPAFNATWATIAMMIAPSLVVDSSCLF 462 Blotched snakehead virus
2YI8_C 460 MNLQLKTYGQGSGNAFTFLNNHLMSTIVVAEWVKAGKPNPMTKEFMDLEEKTGINFKIERELK 522 Infectious pancreatic necrosis virus
Q82630 473 MNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMKQPSPDSEEFKSIEDKLGINFKIERSID 535 Infectious bursal disease virus chicke...
Q8AZL8 463 MNLQLKTYGQGSGNAWTFLINHTLSTILVGKWIEAGQPNPRSKEFMDLEAATGINFKIEREIE 525 Blotched snakehead virus
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