Conserved Protein Domain Family
Carla_C4

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pfam01623: Carla_C4 
Carlavirus putative nucleic acid binding protein
This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF. These proteins may function as viral transcriptional regulators. The carlavirus family includes garlic latent virus and potato virus S and M, these viruses are positive strand, ssRNA with no DNA stage.
Statistics
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PSSM-Id: 250753
Aligned: 10 rows
Threshold Bit Score: 106.312
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q02123   5 RKVLALMQVFRERYDHkCDFNFCDIAVSIVCRSELDFINEp-GLSNYAKRRRARRLGRCVRCFRVNPG-FYFTKRCDGIT 82  Poplar mosaic virus (...
Q00572   5 NKANVVLSLCSMFASR-GNCIPIPIVFNIYMRAFPKLVGR--GTSTYARRRRARSILRCERCYRVYPP-LPFSKKCDNRT 80  Helenium virus S
P37992   1 MDVIVKMLILRKFVEQ-GNVCPIHLCVDIYKRAFPRSVNK--GRSSYARRRRALELGRCHRCYRVYPPlFPEISRCDNRT 77  Chrysanthemum virus B
P27336  28 IMDEALKRRTTIVLCL-LSAFPRDICRDILRRTSSHIVGL--GRSRYARRRRALQIGRCERCYRVYPP--VCGSKCDNKT 102 Lily symptomless virus
O41484   1 MKADRLATLLLCVHRL-GYVLPVEICVNIIS-LSAGPISR--GRSTYGRKRRARSIGRCWRCYRVYPP--ICNSKCDNRT 74  Potato virus S
P16654   1 MKAERLEMLLLCVYRL-GYILPVDVCIKIIS-VAQVSVQ---GRSTYSCKRRARSIGRCWRCYRVYPP--VCNSKCDNRT 73  Potato virus S (strai...
O38024   3 CVTQTALLVARALYLH-SGVFVFEIAYLIST-RAGRPLGG--GRSKYARRRRAIAAGRCHRCYRLWPP-TVFTIKCDNRS 77  Potato virus M
Q01687   3 DVTKVALLIARAMCTS-SGTFVFELAFSIAE-CAGRPLGG--GRSKYARRRRAISIARCHRCYRLWPP-TVFTTRCDNKY 77  Potato virus M (Germa...
P22625   1 MRERKLRKQLEDLFKR--FASVQHGHSDCINIIIAKIKSDqpGESKYARRRRAKSIARCPRCARVSPG-FYFTTRCDGKT 77  Carnation latent virus
O09491  14 IKQRTYRRLLRAIFK----LHTNKNCVDVIDIIVNKIVCGrtGASKYARARRAKSIGRCPRCFRCAPG-FYFTKNCDTKT 88  Garlic latent virus
Q02123  83 CVPGISWNYDVEDYI 97  Poplar mosaic virus (ATCC PV257)
Q00572  81 CVPGISYNIKVADFI 95  Helenium virus S
P37992  78 CVPGISYNSKVRDYI 92  Chrysanthemum virus B
P27336 103 CRPGLSINTNVANYI 117 Lily symptomless virus
O41484  75 CRPGISPNYNVVTFI 89  Potato virus S
P16654  74 CRPGISPNFKVVTFI 88  Potato virus S (strain Peruvian)
O38024  78 CVPGISYNVRVSASR 92  Potato virus M
Q01687  78 CVPGISYNVRVAQFI 92  Potato virus M (German isolate)
P22625  78 CRPGLSARPDLLEFI 92  Carnation latent virus
O09491  89 CTPGISYNEKVKNFI 103 Garlic latent virus
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