Represents ASN.1 type Taxon2-data defined in file taxon1.asn

#include <objects/taxon1/Taxon2_data.hpp>

Inheritance diagram for CTaxon2_data:

Collaboration diagram for CTaxon2_data:

Public Member Functions
	CTaxon2_data (void)

	~CTaxon2_data (void)

void	SetProperty (const string &name, const string &value)

void	SetProperty (const string &name, int value)

void	SetProperty (const string &name, bool value)

bool	GetProperty (const string &name, string &value) const

bool	GetProperty (const string &name, int &value) const

bool	GetProperty (const string &name, bool &value) const

void	ResetProperty (const string &name)

Public Member Functions inherited from CTaxon2_data_Base
	CTaxon2_data_Base (void)

virtual	~CTaxon2_data_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetOrg (void) const
	Org-ref with Org-name and db filled in Check if a value has been assigned to Org data member. More...

bool	CanGetOrg (void) const
	Check if it is safe to call GetOrg method. More...

void	ResetOrg (void)
	Reset Org data member. More...

const TOrg &	GetOrg (void) const
	Get the Org member data. More...

void	SetOrg (TOrg &value)
	Assign a value to Org data member. More...

TOrg &	SetOrg (void)
	Assign a value to Org data member. More...

bool	IsSetBlast_name (void) const
	inherited blast name Check if a value has been assigned to Blast_name data member. More...

bool	CanGetBlast_name (void) const
	Check if it is safe to call GetBlast_name method. More...

void	ResetBlast_name (void)
	Reset Blast_name data member. More...

const TBlast_name &	GetBlast_name (void) const
	Get the Blast_name member data. More...

TBlast_name &	SetBlast_name (void)
	Assign a value to Blast_name data member. More...

bool	IsSetIs_uncultured (void) const
	belongs to environmental bin Check if a value has been assigned to Is_uncultured data member. More...

bool	CanGetIs_uncultured (void) const
	Check if it is safe to call GetIs_uncultured method. More...

void	ResetIs_uncultured (void)
	Reset Is_uncultured data member. More...

TIs_uncultured	GetIs_uncultured (void) const
	Get the Is_uncultured member data. More...

void	SetIs_uncultured (TIs_uncultured value)
	Assign a value to Is_uncultured data member. More...

TIs_uncultured &	SetIs_uncultured (void)
	Assign a value to Is_uncultured data member. More...

bool	IsSetIs_species_level (void) const
	species level or below Check if a value has been assigned to Is_species_level data member. More...

bool	CanGetIs_species_level (void) const
	Check if it is safe to call GetIs_species_level method. More...

void	ResetIs_species_level (void)
	Reset Is_species_level data member. More...

TIs_species_level	GetIs_species_level (void) const
	Get the Is_species_level member data. More...

void	SetIs_species_level (TIs_species_level value)
	Assign a value to Is_species_level data member. More...

TIs_species_level &	SetIs_species_level (void)
	Assign a value to Is_species_level data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) noexcept
	Assignment operator. More...

bool	CanBeDeleted (void) const noexcept
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const noexcept
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const noexcept
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const noexcept
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const noexcept
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Protected Types
typedef list< CRef< CDbtag > >	TOrgProperties

Protected Member Functions
TOrgProperties::iterator	x_FindProperty (const string &name)

TOrgProperties::const_iterator	x_FindPropertyConst (const string &name) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Attributes
TOrgProperties	m_props

Private Types
typedef CTaxon2_data_Base	Tparent

Private Member Functions
	CTaxon2_data (const CTaxon2_data &value)

CTaxon2_data &	operator= (const CTaxon2_data &value)

Additional Inherited Members
Public Types inherited from CTaxon2_data_Base
enum class	E_memberIndex { e__allMandatory = 0 , e_org , e_blast_name , e_is_uncultured , e_is_species_level }

typedef COrg_ref	TOrg

typedef list< string >	TBlast_name

typedef bool	TIs_uncultured

typedef bool	TIs_species_level

typedef Tparent::CMemberIndex< E_memberIndex, 5 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is std::atomic<> More...

typedef TCounter::value_type	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Detailed Description

Definition at line 53 of file Taxon2_data.hpp.

Member Typedef Documentation

◆ TOrgProperties

typedef list< CRef< CDbtag > > CTaxon2_data::TOrgProperties

protected

Definition at line 78 of file Taxon2_data.hpp.

◆ Tparent

typedef CTaxon2_data_Base CTaxon2_data::Tparent

private

Definition at line 55 of file Taxon2_data.hpp.

Constructor & Destructor Documentation

◆ CTaxon2_data() [1/2]

CTaxon2_data::CTaxon2_data ( void )

inline

Definition at line 88 of file Taxon2_data.hpp.

◆ ~CTaxon2_data()

CTaxon2_data::~CTaxon2_data ( void )

Definition at line 50 of file Taxon2_data.cpp.

◆ CTaxon2_data() [2/2]

CTaxon2_data::CTaxon2_data ( const CTaxon2_data & value )

private

Member Function Documentation

◆ GetProperty() [1/3]

bool CTaxon2_data::GetProperty	(	const string &	name,
		bool &	value
	)		const

Definition at line 157 of file Taxon2_data.cpp.

References CObject_id_Base::e_Id, CObject_id_Base::e_Str, i, m_props, NStr::StringToBool(), rapidjson::value, and x_FindPropertyConst().

◆ GetProperty() [2/3]

bool CTaxon2_data::GetProperty	(	const string &	name,
		int &	value
	)		const

Definition at line 141 of file Taxon2_data.cpp.

References CObject_id_Base::e_Id, CObject_id_Base::e_Str, NStr::fConvErr_NoThrow, i, m_props, NStr::StringToInt(), rapidjson::value, and x_FindPropertyConst().

◆ GetProperty() [3/3]

bool CTaxon2_data::GetProperty	(	const string &	name,
		string &	value
	)		const

Definition at line 125 of file Taxon2_data.cpp.

References CObject_id_Base::e_Id, CObject_id_Base::e_Str, i, NStr::IntToString(), m_props, rapidjson::value, and x_FindPropertyConst().

Referenced by CTaxon1::CheckOrgRef(), CTaxon1::Lookup(), and CTaxon1::LookupMerge().

◆ operator=()

CTaxon2_data& CTaxon2_data::operator= ( const CTaxon2_data & value )

private

◆ ResetProperty()

void CTaxon2_data::ResetProperty ( const string & name )

Definition at line 173 of file Taxon2_data.cpp.

References i, m_props, and x_FindProperty().

◆ SetProperty() [1/3]

void CTaxon2_data::SetProperty	(	const string &	name,
		bool	value
	)

Definition at line 109 of file Taxon2_data.cpp.

References i, m_props, CDbtag_Base::SetDb(), CDbtag_Base::SetTag(), rapidjson::value, and x_FindProperty().

◆ SetProperty() [2/3]

void CTaxon2_data::SetProperty	(	const string &	name,
		const string &	value
	)

Definition at line 77 of file Taxon2_data.cpp.

References i, m_props, CDbtag_Base::SetDb(), CDbtag_Base::SetTag(), rapidjson::value, and x_FindProperty().

◆ SetProperty() [3/3]

void CTaxon2_data::SetProperty	(	const string &	name,
		int	value
	)

Definition at line 93 of file Taxon2_data.cpp.

References i, m_props, CDbtag_Base::SetDb(), CDbtag_Base::SetTag(), rapidjson::value, and x_FindProperty().

◆ x_FindProperty()

CTaxon2_data::TOrgProperties::iterator CTaxon2_data::x_FindProperty ( const string & name )

protected

Definition at line 55 of file Taxon2_data.cpp.

References NStr::Equal(), i, m_props, and NON_CONST_ITERATE.

Referenced by ResetProperty(), and SetProperty().

◆ x_FindPropertyConst()

CTaxon2_data::TOrgProperties::const_iterator CTaxon2_data::x_FindPropertyConst ( const string & name ) const

protected

Definition at line 66 of file Taxon2_data.cpp.

References NStr::Equal(), i, ITERATE, and m_props.

Referenced by GetProperty().

Member Data Documentation

◆ m_props

TOrgProperties CTaxon2_data::m_props

protected

Definition at line 79 of file Taxon2_data.hpp.

Referenced by GetProperty(), ResetProperty(), SetProperty(), x_FindProperty(), and x_FindPropertyConst().

The documentation for this class was generated from the following files:

include/objects/taxon1/Taxon2_data.hpp
src/objects/taxon1/Taxon2_data.cpp

Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Private Types

Private Member Functions

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TOrgProperties

◆ Tparent

Constructor & Destructor Documentation

◆ CTaxon2_data() [1/2]

◆ ~CTaxon2_data()

◆ CTaxon2_data() [2/2]

Member Function Documentation

◆ GetProperty() [1/3]

◆ GetProperty() [2/3]

◆ GetProperty() [3/3]

◆ operator=()

◆ ResetProperty()

◆ SetProperty() [1/3]

◆ SetProperty() [2/3]

◆ SetProperty() [3/3]

◆ x_FindProperty()

◆ x_FindPropertyConst()

Member Data Documentation

◆ m_props