Represents ASN.1 type TMgr-DTrackId defined in file trackmgr.asn

Search Toolkit Book for CTMgr_DTrackId

#include <objects/trackmgr/TMgr_DTrackId.hpp>

Inheritance diagram for CTMgr_DTrackId:

Collaboration diagram for CTMgr_DTrackId:

Public Member Functions
	CTMgr_DTrackId (void)

Public Member Functions inherited from CTMgr_DTrackId_Base
	CTMgr_DTrackId_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

const CDbtag &	Get (void) const

CDbtag &	Set (void)

Public Member Functions inherited from CDbtag
	CDbtag (void)

	~CDbtag (void)

int	Compare (const CDbtag &dbt2) const

bool	Match (const CDbtag &dbt2) const

bool	SetAsMatchingTo (const CDbtag &dbt2)

void	GetLabel (string *label) const

bool	IsApproved (EIsRefseq refseq=eIsRefseq_No, EIsSource is_source=eIsSource_No, EIsEstOrGss is_est_or_gss=eIsEstOrGss_No) const

const char *	IsApprovedNoCase (EIsRefseq refseq=eIsRefseq_No, EIsSource is_source=eIsSource_No) const

bool	IsApproved (TDbtagGroup group) const

bool	IsSkippable (void) const

EDbtagType	GetType (void) const

bool	GetDBFlags (bool &is_refseq, bool &is_src, string &correct_caps) const

TDbtagGroup	GetDBFlags (string &correct_caps) const

void	InvalidateType (void)

string	GetUrl (void) const

string	GetUrl (TTaxId taxid) const

string	GetUrl (const string &taxname) const

string	GetUrl (const string &genus, const string &species, const string &subspecies=kEmptyStr) const

Public Member Functions inherited from CDbtag_Base
	CDbtag_Base (void)

virtual	~CDbtag_Base (void)

	DECLARE_INTERNAL_TYPE_INFO ()

bool	IsSetDb (void) const
	name of database or system Check if a value has been assigned to Db data member. More...

bool	CanGetDb (void) const
	Check if it is safe to call GetDb method. More...

void	ResetDb (void)
	Reset Db data member. More...

const TDb &	GetDb (void) const
	Get the Db member data. More...

void	SetDb (const TDb &value)
	Assign a value to Db data member. More...

void	SetDb (TDb &&value)

TDb &	SetDb (void)
	Assign a value to Db data member. More...

bool	IsSetTag (void) const
	appropriate tag Check if a value has been assigned to Tag data member. More...

bool	CanGetTag (void) const
	Check if it is safe to call GetTag method. More...

void	ResetTag (void)
	Reset Tag data member. More...

const TTag &	GetTag (void) const
	Get the Tag member data. More...

void	SetTag (TTag &value)
	Assign a value to Tag data member. More...

TTag &	SetTag (void)
	Assign a value to Tag data member. More...

virtual void	Reset (void)
	Reset the whole object. More...

Public Member Functions inherited from CSerialObject
	CSerialObject (void)

virtual	~CSerialObject (void)

virtual const CTypeInfo *	GetThisTypeInfo (void) const =0

virtual void	Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
	Set object to copy of another one. More...

virtual bool	Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
	Check if both objects contain the same values. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

void	ThrowUnassigned (TMemberIndex index) const

void	ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const

bool	HasNamespaceName (void) const
	Check if object data type has namespace name. More...

const string &	GetNamespaceName (void) const
	Get namespace name. More...

bool	HasNamespacePrefix (void) const
	Check if data type has namespace prefix. More...

const string &	GetNamespacePrefix (void) const
	Get namespace prefix. More...

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) noexcept
	Assignment operator. More...

bool	CanBeDeleted (void) const noexcept
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const noexcept
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const noexcept
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const noexcept
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const noexcept
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Static Public Member Functions
static CRef< CTMgr_DTrackId >	FromTrackIdString (const string &track_id, const string &db="TMS")

Static Public Member Functions inherited from CSerialObject
static void	SetVerifyDataThread (ESerialVerifyData verify)

static void	SetVerifyDataGlobal (ESerialVerifyData verify)

static string	UnassignedString (void)

static CStringUTF8	UnassignedStringUTF8 (void)

static char	UnassignedByte (void)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Private Types
typedef CTMgr_DTrackId_Base	Tparent

Additional Inherited Members
Public Types inherited from CDbtag
enum	EDbtagType { eDbtagType_bad , eDbtagType_AFTOL , eDbtagType_APHIDBASE , eDbtagType_ASAP , eDbtagType_ATCC , eDbtagType_ATCC_dna , eDbtagType_ATCC_in_host , eDbtagType_AceView_WormGenes , eDbtagType_AntWeb , eDbtagType_ApiDB , eDbtagType_ApiDB_CryptoDB , eDbtagType_ApiDB_PlasmoDB , eDbtagType_ApiDB_ToxoDB , eDbtagType_BB , eDbtagType_BDGP_EST , eDbtagType_BDGP_INS , eDbtagType_BEETLEBASE , eDbtagType_BGD , eDbtagType_BoLD , eDbtagType_CCDS , eDbtagType_CDD , eDbtagType_CGNC , eDbtagType_CK , eDbtagType_COG , eDbtagType_CloneID , eDbtagType_CollecTF , eDbtagType_DDBJ , eDbtagType_ECOCYC , eDbtagType_EMBL , eDbtagType_ENSEMBL , eDbtagType_ESTLIB , eDbtagType_EcoGene , eDbtagType_FANTOM_DB , eDbtagType_FBOL , eDbtagType_FLYBASE , eDbtagType_Fungorum , eDbtagType_GABI , eDbtagType_GDB , eDbtagType_GEO , eDbtagType_GI , eDbtagType_GO , eDbtagType_GOA , eDbtagType_GRIN , eDbtagType_GeneDB , eDbtagType_GeneID , eDbtagType_GrainGenes , eDbtagType_Greengenes , eDbtagType_HGNC , eDbtagType_HMP , eDbtagType_HOMD , eDbtagType_HPM , eDbtagType_HPRD , eDbtagType_HSSP , eDbtagType_H_InvDB , eDbtagType_IFO , eDbtagType_IMGT_GENEDB , eDbtagType_IMGT_HLA , eDbtagType_IMGT_LIGM , eDbtagType_IRD , eDbtagType_ISD , eDbtagType_ISFinder , eDbtagType_InterimID , eDbtagType_Interpro , eDbtagType_IntrepidBio , eDbtagType_JCM , eDbtagType_JGIDB , eDbtagType_LRG , eDbtagType_LocusID , eDbtagType_MGI , eDbtagType_MIM , eDbtagType_MaizeGDB , eDbtagType_MycoBank , eDbtagType_NMPDR , eDbtagType_NRESTdb , eDbtagType_NextDB , eDbtagType_OrthoMCL , eDbtagType_Osa1 , eDbtagType_PBR , eDbtagType_PBmice , eDbtagType_PDB , eDbtagType_PFAM , eDbtagType_PGN , eDbtagType_PIR , eDbtagType_PSEUDO , eDbtagType_Pathema , eDbtagType_Phytozome , eDbtagType_PomBase , eDbtagType_PseudoCap , eDbtagType_RAP_DB , eDbtagType_RATMAP , eDbtagType_RBGE_garden , eDbtagType_RBGE_herbarium , eDbtagType_REBASE , eDbtagType_RFAM , eDbtagType_RGD , eDbtagType_RZPD , eDbtagType_RiceGenes , eDbtagType_SEED , eDbtagType_SGD , eDbtagType_SGN , eDbtagType_SK_FST , eDbtagType_SRPDB , eDbtagType_SoyBase , eDbtagType_SubtiList , eDbtagType_TAIR , eDbtagType_TIGRFAM , eDbtagType_UNILIB , eDbtagType_UNITE , eDbtagType_UniGene , eDbtagType_UniProt_SwissProt , eDbtagType_UniProt_TrEMBL , eDbtagType_UniSTS , eDbtagType_VBASE2 , eDbtagType_VBRC , eDbtagType_VectorBase , eDbtagType_Vega , eDbtagType_WorfDB , eDbtagType_WormBase , eDbtagType_Xenbase , eDbtagType_ZFIN , eDbtagType_axeldb , eDbtagType_dbClone , eDbtagType_dbCloneLib , eDbtagType_dbEST , eDbtagType_dbProbe , eDbtagType_dbSNP , eDbtagType_dbSTS , eDbtagType_dictyBase , eDbtagType_miRBase , eDbtagType_niaEST , eDbtagType_taxon , eDbtagType_MGD , eDbtagType_PID , eDbtagType_BEEBASE , eDbtagType_NASONIABASE , eDbtagType_BioProject , eDbtagType_IKMC , eDbtagType_ViPR , eDbtagType_PubChem , eDbtagType_SRA , eDbtagType_Trace , eDbtagType_RefSeq , eDbtagType_EnsemblGenomes , eDbtagType_EnsemblGenomes_Gn , eDbtagType_EnsemblGenomes_Tr , eDbtagType_TubercuList , eDbtagType_MedGen , eDbtagType_CGD , eDbtagType_Assembly , eDbtagType_GenBank , eDbtagType_BioSample , eDbtagType_ISHAM_ITS , eDbtagType_ERIC , eDbtagType_I5KNAL , eDbtagType_VISTA , eDbtagType_BEI , eDbtagType_Araport , eDbtagType_VGNC , eDbtagType_RNAcentral , eDbtagType_PeptideAtlas , eDbtagType_EPDnew , eDbtagType_Ensembl , eDbtagType_EnsemblBeta , eDbtagType_PseudoCAP , eDbtagType_MarpolBase , eDbtagType_dbVar , eDbtagType_EnsemblRapid , eDbtagType_AllianceGenome , eDbtagType_EchinoBase , eDbtagType_AmoebaDB , eDbtagType_CryptoDB , eDbtagType_FungiDB , eDbtagType_GiardiaDB , eDbtagType_MicrosporidiaDB , eDbtagType_PiroplasmaDB , eDbtagType_PlasmoDB , eDbtagType_ToxoDB , eDbtagType_TrichDB , eDbtagType_TriTrypDB , eDbtagType_VEuPathDB , eDbtagType_NCBIOrtholog }

enum	EDbtagGroup { fNone = 0 , fGenBank = 1 << 0 , fRefSeq = 1 << 1 , fSrc = 1 << 2 , fProbe = 1 << 3 }

enum	EIsRefseq { eIsRefseq_No = 0 , eIsRefseq_Yes }

enum	EIsSource { eIsSource_No = 0 , eIsSource_Yes }

enum	EIsEstOrGss { eIsEstOrGss_No = 0 , eIsEstOrGss_Yes }

typedef int	TDbtagGroup
	holds bitwise OR of "EDbtagGroup" More...

Public Types inherited from CDbtag_Base
enum class	E_memberIndex { e__allMandatory = 0 , e_db , e_tag }

typedef string	TDb

typedef CObject_id	TTag

typedef Tparent::CMemberIndex< E_memberIndex, 3 >	TmemberIndex

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is std::atomic<> More...

typedef TCounter::value_type	TCount
	Alias for value type of counter. More...

Static Public Attributes inherited from CSerialObject
static const char *	ms_UnassignedStr = "<unassigned>"

static const char	ms_UnassignedByte = char(0xcd)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Detailed Description

Definition at line 51 of file TMgr_DTrackId.hpp.

Member Typedef Documentation

◆ Tparent

typedef CTMgr_DTrackId_Base CTMgr_DTrackId::Tparent

private

Definition at line 53 of file TMgr_DTrackId.hpp.

Constructor & Destructor Documentation

◆ CTMgr_DTrackId()

CTMgr_DTrackId::CTMgr_DTrackId ( void )

inline

Definition at line 56 of file TMgr_DTrackId.hpp.

Referenced by FromTrackIdString().

Member Function Documentation

◆ FromTrackIdString()

static CRef<CTMgr_DTrackId> CTMgr_DTrackId::FromTrackIdString	(	const string &	track_id,
		const string &	db = `"TMS"`
	)

inlinestatic

Definition at line 60 of file TMgr_DTrackId.hpp.

References CTMgr_DTrackId(), Ref(), and tag.

The documentation for this class was generated from the following file:

include/objects/trackmgr/TMgr_DTrackId.hpp

Public Member Functions

Static Public Member Functions

Private Types