Search Toolkit Book for CID2S_Seq_loc
#include <objects/seqsplit/ID2S_Seq_loc.hpp>
Inheritance diagram for CID2S_Seq_loc:
Collaboration diagram for CID2S_Seq_loc:
Public Member Functions | |
| CID2S_Seq_loc (void) | |
| ~CID2S_Seq_loc (void) | |
| Public Member Functions inherited from CID2S_Seq_loc_Base | |
| CID2S_Seq_loc_Base (void) | |
| virtual | ~CID2S_Seq_loc_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| virtual void | ResetSelection (void) |
| Reset the selection (set it to e_not_set). More... | |
| E_Choice | Which (void) const |
| Which variant is currently selected. More... | |
| void | CheckSelected (E_Choice index) const |
| Verify selection, throw exception if it differs from the expected. More... | |
| void | ThrowInvalidSelection (E_Choice index) const |
| Throw 'InvalidSelection' exception. More... | |
| void | Select (E_Choice index, EResetVariant reset=eDoResetVariant) |
| Select the requested variant if needed. More... | |
| void | Select (E_Choice index, EResetVariant reset, CObjectMemoryPool *pool) |
| Select the requested variant if needed, allocating CObject variants from memory pool. More... | |
| bool | IsWhole_gi (void) const |
| Check if variant Whole_gi is selected. More... | |
| TWhole_gi | GetWhole_gi (void) const |
| Get the variant data. More... | |
| TWhole_gi & | SetWhole_gi (void) |
| Select the variant. More... | |
| void | SetWhole_gi (TWhole_gi value) |
| Select the variant and set its data. More... | |
| bool | IsWhole_seq_id (void) const |
| Check if variant Whole_seq_id is selected. More... | |
| const TWhole_seq_id & | GetWhole_seq_id (void) const |
| Get the variant data. More... | |
| TWhole_seq_id & | SetWhole_seq_id (void) |
| Select the variant. More... | |
| void | SetWhole_seq_id (TWhole_seq_id &value) |
| Select the variant and set its data. More... | |
| bool | IsWhole_gi_range (void) const |
| Check if variant Whole_gi_range is selected. More... | |
| const TWhole_gi_range & | GetWhole_gi_range (void) const |
| Get the variant data. More... | |
| TWhole_gi_range & | SetWhole_gi_range (void) |
| Select the variant. More... | |
| void | SetWhole_gi_range (TWhole_gi_range &value) |
| Select the variant and set its data. More... | |
| bool | IsGi_interval (void) const |
| Check if variant Gi_interval is selected. More... | |
| const TGi_interval & | GetGi_interval (void) const |
| Get the variant data. More... | |
| TGi_interval & | SetGi_interval (void) |
| Select the variant. More... | |
| void | SetGi_interval (TGi_interval &value) |
| Select the variant and set its data. More... | |
| bool | IsSeq_id_interval (void) const |
| Check if variant Seq_id_interval is selected. More... | |
| const TSeq_id_interval & | GetSeq_id_interval (void) const |
| Get the variant data. More... | |
| TSeq_id_interval & | SetSeq_id_interval (void) |
| Select the variant. More... | |
| void | SetSeq_id_interval (TSeq_id_interval &value) |
| Select the variant and set its data. More... | |
| bool | IsGi_ints (void) const |
| Check if variant Gi_ints is selected. More... | |
| const TGi_ints & | GetGi_ints (void) const |
| Get the variant data. More... | |
| TGi_ints & | SetGi_ints (void) |
| Select the variant. More... | |
| void | SetGi_ints (TGi_ints &value) |
| Select the variant and set its data. More... | |
| bool | IsSeq_id_ints (void) const |
| Check if variant Seq_id_ints is selected. More... | |
| const TSeq_id_ints & | GetSeq_id_ints (void) const |
| Get the variant data. More... | |
| TSeq_id_ints & | SetSeq_id_ints (void) |
| Select the variant. More... | |
| void | SetSeq_id_ints (TSeq_id_ints &value) |
| Select the variant and set its data. More... | |
| bool | IsLoc_set (void) const |
| Check if variant Loc_set is selected. More... | |
| const TLoc_set & | GetLoc_set (void) const |
| Get the variant data. More... | |
| TLoc_set & | SetLoc_set (void) |
| Select the variant. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) noexcept |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const noexcept |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const noexcept |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const noexcept |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const noexcept |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const noexcept |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CID2S_Seq_loc_Base | Tparent |
Private Member Functions | |
| CID2S_Seq_loc (const CID2S_Seq_loc &value) | |
| CID2S_Seq_loc & | operator= (const CID2S_Seq_loc &value) |
Additional Inherited Members | |
| Public Types inherited from CID2S_Seq_loc_Base | |
| enum | E_Choice { e_not_set = 0 , e_Whole_gi , e_Whole_seq_id , e_Whole_gi_range , e_Gi_interval , e_Seq_id_interval , e_Gi_ints , e_Seq_id_ints , e_Loc_set } |
| Choice variants. More... | |
| enum | E_ChoiceStopper { e_MaxChoice = 9 } |
| Maximum+1 value of the choice variant enumerator. More... | |
| typedef NCBI_NS_NCBI::TGi | TWhole_gi |
| typedef CSeq_id | TWhole_seq_id |
| typedef CID2S_Gi_Range | TWhole_gi_range |
| typedef CID2S_Gi_Interval | TGi_interval |
| typedef CID2S_Seq_id_Interval | TSeq_id_interval |
| typedef CID2S_Gi_Ints | TGi_ints |
| typedef CID2S_Seq_id_Ints | TSeq_id_ints |
| typedef list< CRef< CID2S_Seq_loc > > | TLoc_set |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is std::atomic<> More... | |
| typedef TCounter::value_type | TCount |
| Alias for value type of counter. More... | |
| Static Public Member Functions inherited from CID2S_Seq_loc_Base | |
| static string | SelectionName (E_Choice index) |
| Retrieve selection name (for diagnostic purposes). More... | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 65 of file ID2S_Seq_loc.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqsplit/ID2S_Seq_loc.hpp
- src/objects/seqsplit/ID2S_Seq_loc.cpp
