Parameters

Defined in file blastxml2.asn
C++ class: CParameters


Parameters ::= SEQUENCE {
	matrix VisibleString OPTIONAL ,	    -- Matrix used (-M)
	expect REAL ,			    -- Expectation threshold (-e)
	include REAL OPTIONAL ,		    -- Inclusion threshold (-h)
	sc-match INTEGER OPTIONAL ,	    -- match score for NT (-r)
	sc-mismatch INTEGER OPTIONAL ,	    -- mismatch score for NT (-q)
	gap-open INTEGER OPTIONAL,          -- Gap opening cost (-G)
	gap-extend INTEGER OPTIONAL,	    -- Gap extension cost (-E)
	filter VisibleString OPTIONAL,      -- Filtering options (-F)
	pattern VisibleString OPTIONAL,	    -- PHI-BLAST pattern
    	entrez-query VisibleString OPTIONAL, -- Limit of request to Entrez query
	cbs INTEGER OPTIONAL,	 	    -- composition-based stats (numbers correspond to
					    -- numbering in stand-alone application parameter -comp_based_stats).
	query-gencode INTEGER OPTIONAL,     -- genetic code for query (blastx or tblastx)
	db-gencode INTEGER OPTIONAL,	    -- genetic code for db or subjects (tblastn or tblastx)
	bl2seq-mode VisibleString OPTIONAL  -- bl2seq mode 
}