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Report for CCDS6604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6604.1 Public Homo sapiens 9 RNF38 24 110 108 CCDS HistoryNCBI Gene:152006Re-query CCDS DB by CCDS ID:6604.1Re-query CCDS DB by GeneID:152006See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353739.8 ENSP00000335239.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353739.8Link to Ensembl Protein Viewer:ENSP00000335239.5Re-query CCDS DB by Nucleotide ID:ENST00000353739Re-query CCDS DB by Protein ID:ENSP00000335239
Original member Current member NCBI NM_194329.3 NP_919310.1 Accepted alive Link to Nucleotide Sequence:NM_194329.3Link to Protein Sequence:NP_919310.1Re-query CCDS DB by Nucleotide ID:NM_194329Re-query CCDS DB by Protein ID:NP_919310Link to BLAST:NP_919310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919310.1 465 Q9H0F5-2 465 100% 0 0

Chromosomal Locations for CCDS 6604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36339752 36339814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36342325 36342424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36344832 36344953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36351115 36351199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36352742 36352848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36353170 36353331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36356303 36356473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36357775 36357942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36369719 36369932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36375934 36376127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36400097 36400108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCTTGTAAGAGTGAAGATAGTCCAAGTCCTAAGAGACAGCGCCTCTCTCATTCAGTCTTTGATTATA
CATCAGCATCACCAGCTCCCTCACCACCAATGCGACCATGGGAGATGACATCAAATAGGCAGCCCCCTTC
AGTTCGACCAAGCCAACATCACTTCTCAGGGGAACGATGCAACACACCTGCACGCAACAGAAGAAGTCCT
CCTGTCAGGCGCCAGAGAGGAAGAAGGGATCGTCTGTCTCGACATAATTCCATTAGTCAAGATGAAAACT
ATCACCATCTCCCTTACGCACAGCAGCAAGCAATAGAGGAGCCTCGAGCCTTCCACCCTCCGAATGTATC
TCCCCGTCTGCTACATCCTGCTGCTCATCCACCCCAGCAGAATGCAGTCATGGTTGACATACATGATCAG
CTCCATCAAGGAACAGTCCCTGTTTCTTACACAGTAACAACAGTGGCACCACATGGGATTCCACTCTGCA
CAGGCCAGCACATCCCTGCTTGTAGTACACAGCAGGTCCCAGGATGCTCTGTGGTTTTCAGTGGACAGCA
CCTCCCTGTCTGTAGTGTGCCTCCTCCAATGCTTCAGGCATGTTCAGTTCAGCACTTACCAGTACCATAT
GCTGCATTCCCACCCCTTATTTCTAGTGATCCATTTCTTATACATCCTCCTCACCTTTCTCCCCATCATC
CTCCTCATTTGCCACCACCAGGCCAGTTTGTCCCTTTCCAAACACAGCAATCACGATCGCCTCTGCAAAG
GATAGAAAATGAAGTGGAACTCTTAGGAGAACATCTTCCAGTAGGAGGTTTTACTTACCCTCCATCAGCC
CACCCCCCAACATTACCTCCATCAGCTCCCTTGCAGTTCTTAACACATGATCCTTTGCATCAGGAGGTGT
CCTTTGGAGTACCTTATCCTCCATTTATGCCTCGGAGGCTTACAGGACGTAGTAGATACCGATCCCAGCA
GCCAATACCACCTCCCCCTTATCATCCCAGCTTACTGCCATATGTGTTATCAATGCTTCCAGTGCCACCT
GCAGTGGGCCCAACTTTCAGCTTTGAATTAGATGTAGAAGATGGAGAAGTAGAAAATTACGAGGCCCTGT
TAAACCTGGCAGAGCGACTGGGAGAGGCAAAGCCTCGTGGACTGACTAAAGCAGATATTGAACAACTTCC
TTCTTATCGGTTCAATCCTAACAACCACCAGTCAGAACAGACTTTGTGTGTAGTATGCATGTGTGATTTT
GAGTCAAGGCAGCTACTTAGAGTCTTACCCTGTAACCACGAGTTCCATGCCAAGTGTGTTGACAAATGGC
TTAAGGCAAATCGTACTTGCCCAATTTGCCGAGCTGATGCTTCAGAAGTGCATCGGGATTCAGAATGA

Translation (465 aa):
MACKSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEMTSNRQPPSVRPSQHHFSGERCNTPARNRRSP
PVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQ
LHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPY
AAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSA
HPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPP
AVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDF
ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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