NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2621.1 Public Homo sapiens 3 NR2C2 24 110 108 CCDS HistoryNCBI Gene:7182Re-query CCDS DB by CCDS ID:2621.1Re-query CCDS DB by GeneID:7182See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323373.10 ENSP00000320447.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323373.10Link to Ensembl Protein Viewer:ENSP00000320447.6Re-query CCDS DB by Nucleotide ID:ENST00000323373Re-query CCDS DB by Protein ID:ENSP00000320447
Original member Current member EBI ENST00000617312.4 ENSP00000483059.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617312.4Link to Ensembl Protein Viewer:ENSP00000483059.1Re-query CCDS DB by Nucleotide ID:ENST00000617312Re-query CCDS DB by Protein ID:ENSP00000483059
Original member Current member NCBI NM_003298.5 NP_003289.2 Accepted alive Link to Nucleotide Sequence:NM_003298.5Link to Protein Sequence:NP_003289.2Re-query CCDS DB by Nucleotide ID:NM_003298Re-query CCDS DB by Protein ID:NP_003289Link to BLAST:NP_003289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003289.2 615 P49116-2 615 100% 0 0

Chromosomal Locations for CCDS 2621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15003915 15003986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15004557 15004613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15013589 15013789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15016152 15016254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15020753 15020932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15023200 15023347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15024115 15024208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15028586 15028719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15030275 15030452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15032379 15032500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15034670 15034809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15038000 15038137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15039122 15039227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15042834 15043008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGACCAGCCCCTCCCCACGCATCCAGATAATCTCCACCGACTCTGCTGTAGCCTCACCTCAGCGCATTC
AGGGCTCTGAACCTGCCTCTGGCCCATTGAGTGTTTTCACATCTTTGAACAAAGAGAAGATTGTCACAGA
CCAGCAGACAGGACAGAAAATCCAGATAGTCACCGCAGTGGACGCCTCCGGATCCCCCAAACAGCAGTTC
ATCCTGACCAGCCCAGATGGAGCTGGAACTGGGAAGGTGATCCTGGCTTCCCCAGAGACATCCAGCGCCA
AGCAACTCATATTCACCACCTCAGACAACCTCGTCCCTGGCAGGATCCAGATTGTCACGGATTCTGCCTC
TGTGGAGCGTTTACTGGGGAAGACGGACGTCCAGCGGCCCCAGGTGGTAGAGTACTGTGTGGTCTGTGGC
GACAAAGCCTCCGGCCGTCACTATGGGGCTGTCAGTTGTGAAGGTTGCAAAGGTTTCTTCAAAAGGAGTG
TGAGGAAAAATTTGACCTACAGCTGCCGGAGCAACCAAGACTGCATCATCAATAAACATCACCGGAACCG
CTGTCAGTTTTGCCGGCTGAAAAAATGCTTAGAGATGGGCATGAAAATGGAATCTGTGCAGAGTGAACGG
AAGCCCTTCGATGTGCAACGGGAGAAACCAAGCAATTGTGCTGCTTCAACTGAGAAAATCTATATCCGGA
AAGACCTGAGAAGTCCCCTGATAGCTACTCCCACGTTTGTGGCAGACAAAGATGGAGCAAGACAAACAGG
TCTTCTTGATCCAGGGATGCTTGTGAACATCCAGCAGCCTTTGATACGTGAGGATGGTACAGTTCTCCTG
GCCACGGATTCTAAGGCTGAAACAAGCCAGGGAGCTCTGGGCACACTGGCAAATGTAGTGACCTCCCTTG
CCAACCTAAGTGAATCTTTGAACAACGGTGACACTTCAGAAATCCAGCCAGAGGACCAGTCTGCAAGTGA
GATAACTCGGGCATTTGATACCTTAGCTAAAGCACTTAATACCACAGACAGCTCCTCTTCTCCAAGCTTG
GCAGATGGGATAGACACCAGTGGAGGAGGGAGCATCCACGTCATCAGCAGAGACCAGTCGACACCCATCA
TTGAGGTTGAAGGCCCCCTCCTTTCAGACACACACGTCACATTTAAGCTAACAATGCCCAGTCCAATGCC
AGAGTACCTCAACGTGCACTACATCTGTGAGTCTGCATCCCGTCTGCTTTTCCTCTCAATGCACTGGGCT
CGGTCAATCCCAGCCTTTCAGGCACTTGGGCAGGACTGCAACACCAGCCTTGTGCGGGCCTGCTGGAATG
AGCTCTTCACCCTCGGCCTGGCCCAGTGTGCCCAGGTCATGAGTCTCTCCACCATCCTGGCTGCCATTGT
CAACCACCTGCAGAACAGCATCCAGGAAGATAAACTTTCTGGTGACCGGATAAAGCAAGTCATGGAGCAC
ATCTGGAAGCTGCAGGAGTTCTGTAACAGCATGGCGAAGCTGGATATAGATGGCTATGAGTATGCATACC
TTAAAGCTATAGTTCTCTTTAGCCCCGATCATCCAGGTTTGACCAGCACAAGCCAGATTGAAAAATTCCA
AGAAAAGGCACAGATGGAGTTGCAGGACTATGTTCAGAAAACCTACTCAGAAGACACCTACCGATTGGCC
CGGATCCTCGTTCGCCTGCCGGCACTCAGGCTGATGAGCTCCAACATAACAGAAGAACTTTTTTTTACTG
GTCTCATTGGCAATGTTTCGATAGACAGCATAATCCCCTACATCCTCAAGATGGAGACAGCAGAGTATAA
TGGCCAGATCACCGGAGCCAGTCTATAG

Translation (615 aa):
MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQF
ILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCG
DKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLL
ATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSL
ADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEH
IWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLA
RILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH