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Report for CCDS93062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93062.1 Public Homo sapiens 20 CASS4 24 110 108 CCDS HistoryNCBI Gene:57091Re-query CCDS DB by CCDS ID:93062.1Re-query CCDS DB by GeneID:57091See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679529.1 ENSP00000505834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679529.1Link to Ensembl Protein Viewer:ENSP00000505834.1Re-query CCDS DB by Nucleotide ID:ENST00000679529Re-query CCDS DB by Protein ID:ENSP00000505834
Original member Current member NCBI NM_001164114.2 NP_001157586.1 Accepted alive Link to Nucleotide Sequence:NM_001164114.2Link to Protein Sequence:NP_001157586.1Re-query CCDS DB by Nucleotide ID:NM_001164114Re-query CCDS DB by Protein ID:NP_001157586Link to BLAST:NP_001157586.1

Chromosomal Locations for CCDS 93062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56412459 56412494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56437164 56437424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56445900 56446001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56450599 56450679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56451819 56453129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56458340 56458747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGAAGGGAACAGGCATCATGGACTGTGCGCCCAAGGCACTCCTGGCCAGGGCACTTTATGACAACTGCC
CTGACTGCTCTGACGAGCTGGCTTTCAGCAGAGGGGACATCCTGACCATTCTGGAGCAACACGTGCCAGA
AAGCGAGGGTTGGTGGAAGTGTTTGCTCCATGGGAGGCAAGGCCTGGCCCCTGCCAACCGCCTCCAAATC
CTCACGGAGGTCGCTGCAGACAGGCCGTGCCCCCCATTCCTGAGAGGCCTGGAAGAAGCTCCTGCCAGCT
CAGAGGAGACCTATCAGGCCATCCTCACGCTTCCCAGACCTGTCCGGGCCTCACTGCCGACTCTGCCTTC
CCAGGTGTATGACGTGCCTACCCAGCACCGGGGCCCCGTGGTCCTGAAGGAGCCAGAGAAGCAGCAGTTA
TATGACATACCAGCCAGCCCCAAGAAGGCAGGACTCCATCCCCCAGACAGCCAAGCAAGTGGGCAGGGTG
TTCCCCTGATATCAGTGACTACCTTAAGAAGAGGCGGTTACAGCACATTACCAAATCCTCAGAAATCGGA
ATGGATTTATGACACTCCAGTGTCTCCAGGAAAGGCCAGCGTCAGAAACACGCCTCTCACCAGCTTTGCG
GAAGAATCAAGGCCCCACGCTCTCCCCAGTTCCAGCTCCACTTTCTACAATCCTCCAAGTGGCAGATCCA
GGTCCCTCACTCCACAACTGAATAACAATGTGCCCATGCAGAAAAAACTCAGCCTTCCAGAAATTCCTTC
TTATGGCTTTCTTGTACCCAGAGGCACATTTCCTTTGGATGAAGATGTCAGCTACAAGGTTCCTTCAAGC
TTTCTGATTCCCCGAGTGGAACAGCAGAACACCAAGCCCAATATTTATGACATCCCTAAAGCAACGTCGA
GTGTTTCTCAGGCTGGGAAGGAGCTGGAGAAAGCCAAGGAGGTGTCAGAGAATTCCGCGGGCCATAATTC
CTCATGGTTCTCCAGACGGACAACTTCCCCATCTCCTGAACCGGACAGATTATCAGGTTCCAGTTCTGAC
AGCAGAGCTAGCATCGTTTCCTCGTGCTCCACCACATCCACCGACGACTCCTCCAGCTCTTCCTCGGAGG
AGTCAGCAAAGGAGCTCTCCTTGGACCTGGATGTGGCCAAGGAGACAGTGATGGCTCTGCAGCACAAGGT
GGTCAGCTCTGTCGCTGGCCTGATGCTCTTTGTCAGCAGGAAGTGGAGATTCCGAGACTATCTGGAGGCC
AACATTGATGCAATCCACAGGTCCACTGATCACATAGAAGAATCTGTAAGAGAATTTCTGGATTTTGCCC
GAGGAGTCCATGGGACTGCCTGTAACCTCACTGACAGTAACCTTCAGAACAGAATTCGGGACCAGATGCA
GACCATCTCCAACTCCTACCGCATCCTGCTTGAAACAAAGGAAAGCTTGGATAATCGCAATTGGCCTCTG
GAAGTTCTTGTGACTGACAGTGTCCAGAACAGCCCAGATGACCTTGAGAGGTTTGTCATGGTGGCACGGA
TGCTTCCAGAAGACATCAAGAGGTTTGCCTCCATTGTCATTGCCAATGGAAGGCTCCTTTTTAAGCGGAA
CTGTGAAAAGGAAGAGACTGTGCAGTTGACCCCAAATGCAGAATTTAAGTGTGAAAAATACATCCAGCCT
CCCCAAAGAGAAACTGAATCACACCAAAAGAGTACCCCTTCCACTAAGCAAAGGGAAGATGAACACTCTT
CTGAACTATTAAAGAAAAATAGGGCAAATATCTGTGGACAGAATCCTGGCCCTCTTATACCTCAGCCTTC
GAGTCAACAGACTCCTGAGAGGAAACCCCGCTTATCTGAACACTGCCGGCTCTACTTTGGGGCGCTCTTC
AAAGCCATCAGCGCATTTCACGGCAGCCTCAGCAGCAGCCAGCCCGCGGAGATCATCACTCAGAGCAAGC
TGGTCATCATGGTGGGACAGAAGCTGGTGGACACGCTGTGCATGGAGACCCAGGAGAGGGACGTGCGCAA
CGAGATCCTCCGTGGCAGCAGTCACCTCTGCAGCCTGCTCAAGGACGTAGCGCTGGCCACTAAGAATGCC
GTGCTCACGTACCCCAGCCCTGCCGCGCTGGGGCACCTCCAGGCGGAGGCTGAGAAGCTGGAGCAACACA
CGCGGCAGTTCAGAGGGACACTGGGATGA

Translation (732 aa):
MKGTGIMDCAPKALLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI
LTEVAADRPCPPFLRGLEEAPASSEETYQAILTLPRPVRASLPTLPSQVYDVPTQHRGPVVLKEPEKQQL
YDIPASPKKAGLHPPDSQASGQGVPLISVTTLRRGGYSTLPNPQKSEWIYDTPVSPGKASVRNTPLTSFA
EESRPHALPSSSSTFYNPPSGRSRSLTPQLNNNVPMQKKLSLPEIPSYGFLVPRGTFPLDEDVSYKVPSS
FLIPRVEQQNTKPNIYDIPKATSSVSQAGKELEKAKEVSENSAGHNSSWFSRRTTSPSPEPDRLSGSSSD
SRASIVSSCSTTSTDDSSSSSSEESAKELSLDLDVAKETVMALQHKVVSSVAGLMLFVSRKWRFRDYLEA
NIDAIHRSTDHIEESVREFLDFARGVHGTACNLTDSNLQNRIRDQMQTISNSYRILLETKESLDNRNWPL
EVLVTDSVQNSPDDLERFVMVARMLPEDIKRFASIVIANGRLLFKRNCEKEETVQLTPNAEFKCEKYIQP
PQRETESHQKSTPSTKQREDEHSSELLKKNRANICGQNPGPLIPQPSSQQTPERKPRLSEHCRLYFGALF
KAISAFHGSLSSSQPAEIITQSKLVIMVGQKLVDTLCMETQERDVRNEILRGSSHLCSLLKDVALATKNA
VLTYPSPAALGHLQAEAEKLEQHTRQFRGTLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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