NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9820.1 Public Homo sapiens 14 PTGR2 24 110 108 CCDS HistoryNCBI Gene:145482Re-query CCDS DB by CCDS ID:9820.1Re-query CCDS DB by GeneID:145482See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267568.8 ENSP00000267568.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000267568.8Link to Ensembl Protein Viewer:ENSP00000267568.4Re-query CCDS DB by Nucleotide ID:ENST00000267568Re-query CCDS DB by Protein ID:ENSP00000267568
Original member Current member EBI ENST00000555228.5 ENSP00000450975.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555228.5Link to Ensembl Protein Viewer:ENSP00000450975.1Re-query CCDS DB by Nucleotide ID:ENST00000555228Re-query CCDS DB by Protein ID:ENSP00000450975
Original member Current member EBI ENST00000555661.6 ENSP00000452280.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000555661.6Link to Ensembl Protein Viewer:ENSP00000452280.1Re-query CCDS DB by Nucleotide ID:ENST00000555661Re-query CCDS DB by Protein ID:ENSP00000452280
Original member Current member NCBI NM_001146154.2 NP_001139626.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146154.2Link to Protein Sequence:NP_001139626.1Re-query CCDS DB by Nucleotide ID:NM_001146154Re-query CCDS DB by Protein ID:NP_001139626Link to BLAST:NP_001139626.1
Original member Current member NCBI NM_001146155.3 NP_001139627.1 Accepted alive Link to Nucleotide Sequence:NM_001146155.3Link to Protein Sequence:NP_001139627.1Re-query CCDS DB by Nucleotide ID:NM_001146155Re-query CCDS DB by Protein ID:NP_001139627Link to BLAST:NP_001139627.1
Original member Current member NCBI NM_001371325.1 NP_001358254.1 Accepted alive Link to Nucleotide Sequence:NM_001371325.1Link to Protein Sequence:NP_001358254.1Re-query CCDS DB by Nucleotide ID:NM_001371325Re-query CCDS DB by Protein ID:NP_001358254Link to BLAST:NP_001358254.1
Original member Current member NCBI NM_152444.4 NP_689657.1 Accepted alive Link to Nucleotide Sequence:NM_152444.4Link to Protein Sequence:NP_689657.1Re-query CCDS DB by Nucleotide ID:NM_152444Re-query CCDS DB by Protein ID:NP_689657Link to BLAST:NP_689657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139626.1 351 Q8N8N7-1 351 100% 0 0
NP_001139627.1 351 Q8N8N7-1 351 100% 0 0
NP_001358254.1 351 Q8N8N7-1 351 100% 0 0
NP_689657.1 351 Q8N8N7-1 351 100% 0 0

Chromosomal Locations for CCDS 9820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73858863 73858899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73860539 73860657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73874023 73874214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73876998 73877168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73879096 73879305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73880055 73880176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73881205 73881292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73882399 73882438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73884101 73884177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTGGAAAAAATGGTAATCCAGTGGCAGAGAATTTCC
GAATGGAAGAAGTCTATTTACCAGATAATATTAATGAAGGACAAGTACAAGTTAGAACTCTTTATCTTTC
TGTGGATCCTTACATGCGTTGTAGAATGAATGAAGACACTGGCACTGATTATATAACACCTTGGCAGCTA
TCTCAAGTCGTTGATGGAGGAGGTATTGGAATTATAGAAGAAAGCAAACACACAAATTTGACTAAAGGCG
ATTTTGTGACTTCTTTCTATTGGCCCTGGCAAACCAAGGTTATTCTGGATGGAAATAGCCTTGAAAAGGT
AGACCCACAACTTGTGGATGGACACCTTTCATATTTTCTTGGAGCTATAGGTATGCCTGGTTTGACTTCC
TTGATTGGGATACAGGAAAAAGGTCATATAACTGCTGGATCTAATAAGACAATGGTTGTCAGTGGGGCCG
CAGGTGCCTGTGGATCTGTGGCTGGGCAGATTGGCCATTTCTTAGGTTGTTCCAGAGTGGTGGGAATTTG
TGGAACACATGAGAAATGCATCCTCTTGACCTCAGAACTGGGCTTTGATGCTGCAATTAATTATAAAAAA
GACAATGTGGCAGAACAGCTCCGTGAATCATGCCCAGCTGGAGTGGATGTTTATTTTGACAATGTTGGTG
GTAACATCAGTGATACAGTGATAAGTCAGATGAATGAGAACAGCCACATCATCCTGTGTGGTCAAATTTC
TCAGTACAACAAAGATGTGCCTTATCCTCCCCCGCTATCCCCTGCTATAGAGGCAATCCAGAAAGAAAGA
AACATCACAAGGGAAAGATTTCTGGTATTAAATTATAAAGACAAATTTGAGCCTGGCATTCTACAGCTGA
GTCAGTGGTTTAAAGAAGGAAAGCTAAAGATTAAAGAGACGGTAATAAATGGGTTGGAAAACATGGGAGC
TGCATTCCAGTCCATGATGACAGGAGGTAACATTGGAAAGCAGATAGTTTGCATTTCAGAAGAAATCTCT
TTGTAA

Translation (351 aa):
MIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQL
SQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTS
LIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK
DNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKER
NITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEEIS
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH