NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11534.1 Public Homo sapiens 17 HOXB9 24 110 108 CCDS HistoryNCBI Gene:3219Re-query CCDS DB by CCDS ID:11534.1Re-query CCDS DB by GeneID:3219See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311177.7 ENSP00000309439.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311177.7Link to Ensembl Protein Viewer:ENSP00000309439.5Re-query CCDS DB by Nucleotide ID:ENST00000311177Re-query CCDS DB by Protein ID:ENSP00000309439
Original member Current member NCBI NM_024017.5 NP_076922.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024017.5Link to Protein Sequence:NP_076922.1Re-query CCDS DB by Nucleotide ID:NM_024017Re-query CCDS DB by Protein ID:NP_076922Link to BLAST:NP_076922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076922.1 250 P17482 250 100% 0 0

Chromosomal Locations for CCDS 11534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48622900 48623135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48625753 48626269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCCATTTCTGGGACGCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACGAGAGTGAGGACGCGC
CTCCAGCCAAGTTTCCTTCTGGCCAGTACGCGAGCTCGCGGCAGCCGGGCCACGCGGAGCACCTGGAGTT
CCCCTCGTGCAGCTTCCAGCCCAAAGCGCCGGTGTTCGGCGCCTCCTGGGCGCCGCTGAGCCCGCACGCG
TCCGGGAGCCTGCCGTCCGTCTACCACCCTTACATCCAGCCCCAGGGCGTCCCGCCGGCCGAGAGCAGGT
ACCTCCGCACCTGGCTGGAGCCGGCGCCGCGCGGCGAAGCGGCCCCGGGGCAGGGCCAGGCGGCGGTGAA
GGCGGAGCCGCTGCTGGGCGCGCCTGGGGAGCTGCTCAAACAGGGCACGCCCGAGTACAGTTTGGAAACT
TCGGCGGGCAGGGAGGCCGTGCTGTCTAATCAAAGACCCGGCTACGGGGACAATAAAATTTGCGAAGGAA
GCGAGGACAAAGAGAGGCCGGATCAAACCAACCCCTCCGCCAACTGGCTGCACGCTCGCTCTTCCCGGAA
AAAGCGCTGTCCCTACACCAAATACCAGACGCTGGAGCTAGAGAAGGAGTTTCTGTTCAATATGTACCTC
ACCAGGGACCGTAGGCACGAAGTGGCCAGACTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTC
AGAACCGGCGGATGAAAATGAAGAAAATGAATAAGGAGCAGGGCAAAGAGTAA

Translation (250 aa):
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHA
SGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLET
SAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYL
TRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH