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Report for CCDS59199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59199.1 Public Homo sapiens 1 PPIAL4D 24 110 108 CCDS HistoryNCBI Gene:645142Re-query CCDS DB by CCDS ID:59199.1Re-query CCDS DB by GeneID:645142See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 59199.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred, but it is supported by the full-length paralogous transcript AB084917.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 59199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544708.3 ENSP00000439444.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000544708.3Link to Ensembl Protein Viewer:ENSP00000439444.1Re-query CCDS DB by Nucleotide ID:ENST00000544708Re-query CCDS DB by Protein ID:ENSP00000439444
Original member Current member NCBI NM_001164261.2 NP_001157733.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164261.2Link to Protein Sequence:NP_001157733.1Re-query CCDS DB by Nucleotide ID:NM_001164261Re-query CCDS DB by Protein ID:NP_001157733Link to BLAST:NP_001157733.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157733.1 164 F5H284 164 100% 0 0

Chromosomal Locations for CCDS 59199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145241630 145242124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGTCAACTCCGTCGTCTTTTTTGAAATCACCAGGGATGGCAAGCCCTTGGGCCGCATCTCCATCAAAC
TGTTTGCAGACAAGATTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTCG
TTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGGTGGTGACTTCACACGCCCT
AATGGCACCGGTGACAAGTCCATCTATGGGGAGAAATTTGATGATGAGAACCTCATCCGAAAGCATACAG
GTTCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAATGGTTCCCAGTTTTTCATCTGCGCTGC
CAAGACTGAGTGGTTGGATGGCAAGCATGTGGCGTTTGGCAAGGTGAAAGAACGTGTGAATATTGTGGAA
GCCACGGAGCACTTTGGGTACAGGAATAGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAAT
TCTAA

Translation (164 aa):
MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRP
NGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVE
ATEHFGYRNSKTSKKITIADCGQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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