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Report for CCDS14346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14346.1 Public Homo sapiens X XAGE5 24 110 108 CCDS HistoryNCBI Gene:170627Re-query CCDS DB by CCDS ID:14346.1Re-query CCDS DB by GeneID:170627See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 14346.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351072.5 ENSP00000342240.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351072.5Link to Ensembl Protein Viewer:ENSP00000342240.1Re-query CCDS DB by Nucleotide ID:ENST00000351072Re-query CCDS DB by Protein ID:ENSP00000342240
Original member Current member EBI ENST00000375501.2 ENSP00000364651.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375501.2Link to Ensembl Protein Viewer:ENSP00000364651.1Re-query CCDS DB by Nucleotide ID:ENST00000375501Re-query CCDS DB by Protein ID:ENSP00000364651
Original member Current member NCBI NM_001386970.1 NP_001373899.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386970.1Link to Protein Sequence:NP_001373899.1Re-query CCDS DB by Nucleotide ID:NM_001386970Re-query CCDS DB by Protein ID:NP_001373899Link to BLAST:NP_001373899.1
Original member Current member NCBI NM_130775.3 NP_570131.1 Accepted alive Link to Nucleotide Sequence:NM_130775.3Link to Protein Sequence:NP_570131.1Re-query CCDS DB by Nucleotide ID:NM_130775Re-query CCDS DB by Protein ID:NP_570131Link to BLAST:NP_570131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373899.1 108 Q8WWM1 108 100% 0 0
NP_570131.1 108 Q8WWM1 108 100% 0 0

Chromosomal Locations for CCDS 14346.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52812567 52812638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52813140 52813245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52815092 52815217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52818191 52818213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGAGTTGGCGAGGAAGAAGATATAGACCAAGACGATGTTTACGACTTGCTCAGCTGGTTGGGCCTATGC
TTGAGCCCAGTGTGCCAGAGCCTCAACAAGAAGAACCACCAACTGAAAGTCAGGATCATACACCTGGTCA
GAAGAGAGAAGATGATCAGGGTGCAGCTGAGATTCAAGTGCCTAACCTGGAAGCTGATCTCCAGGAGCTG
TCTCAGTCAAAGACTGGGGATGAATGCGGAGATAGTCCTGATGTCCAGGGGAAGATTCTGCCAAAATCAG
AGCAATTTAAAATGCCAGAAGGAGGGGAAGGGAAACCACAGCTTTAA

Translation (108 aa):
MSWRGRRYRPRRCLRLAQLVGPMLEPSVPEPQQEEPPTESQDHTPGQKREDDQGAAEIQVPNLEADLQEL
SQSKTGDECGDSPDVQGKILPKSEQFKMPEGGEGKPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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