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Report for CCDS73772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73772.1 Public Homo sapiens 15 SH3GL3 24 110 108 CCDS HistoryNCBI Gene:6457Re-query CCDS DB by CCDS ID:73772.1Re-query CCDS DB by GeneID:6457See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324537.5 ENSP00000320092.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324537.5Link to Ensembl Protein Viewer:ENSP00000320092.5Re-query CCDS DB by Nucleotide ID:ENST00000324537Re-query CCDS DB by Protein ID:ENSP00000320092
Original member Current member NCBI NM_001301109.2 NP_001288038.1 Accepted alive Link to Nucleotide Sequence:NM_001301109.2Link to Protein Sequence:NP_001288038.1Re-query CCDS DB by Nucleotide ID:NM_001301109Re-query CCDS DB by Protein ID:NP_001288038Link to BLAST:NP_001288038.1
Original member Current member NCBI NM_001324183.2 NP_001311112.1 Accepted alive Link to Nucleotide Sequence:NM_001324183.2Link to Protein Sequence:NP_001311112.1Re-query CCDS DB by Nucleotide ID:NM_001324183Re-query CCDS DB by Protein ID:NP_001311112Link to BLAST:NP_001311112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288038.1 355 Q99963-3 355 100% 0 0
NP_001311112.1 355 Q99963-3 355 100% 0 0

Chromosomal Locations for CCDS 73772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83490834 83490902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83559253 83559321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83565134 83565206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83568529 83568672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83572565 83572698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83576583 83576741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83586983 83587086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83588662 83588771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83618082 83618287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGATGGAATCTTTGCTGGGATAATATGCAATCAAGCTAATAGGTGCCTTACCTGGACCTCCCAACAGC
TATTTAGTGAAAAAATAAGTGGTGCTGAAGGAACTAAACTAGACGATGAATTTCTTGACATGGAAAGGAA
AATAGATGTTACCAATAAAGTTGTTGCAGAAATTCTTTCAAAAACCACTGAATATCTTCAGCCAAATCCA
GCATACAGAGCTAAGCTAGGAATGCTGAACACTGTGTCGAAGATCCGAGGGCAGGTGAAGACCACAGGAT
ACCCGCAGACGGAAGGCTTGCTGGGGGACTGTATGCTGAAATACGGGAAGGAGCTCGGGGAAGACTCCAC
CTTTGGCAATGCATTGATAGAAGTTGGTGAATCCATGAAGCTAATGGCTGAGGTGAAAGACTCTCTTGAT
ATTAATGTAAAGCAAACTTTTATTGATCCACTTCAGTTACTACAAGATAAAGATTTAAAAGAGATCGGGC
ATCACCTGAAAAAGCTGGAAGGCCGCCGCCTGGATTACGATTATAAAAAGAAACGAGTAGGTAAGATACC
AGACGAAGAAGTCAGACAAGCGGTAGAAAAATTTGAAGAGTCAAAGGAGTTGGCTGAAAGAAGCATGTTT
AACTTTTTAGAAAATGATGTAGAACAAGTCAGCCAGTTGGCTGTGTTCATAGAGGCAGCATTAGACTATC
ACAGACAGTCCACAGAGATTCTGCAGGAGCTGCAGAGCAAGCTACAGATGCGAATATCAGCTGCATCCAG
TGTCCCCAGACGAGAATACAAGCCAAGGCCTGTGAAAAGGAGTTCTAGTGAGCTCAATGGAGTTTCCACC
ACCTCTGTAGTGAAGACGACAGGTTCTAACATTCCCATGGACCAGCCCTGCTGTCGTGGTCTCTATGACT
TTGAGCCAGAAAACCAAGGAGAATTAGGATTTAAAGAAGGGGACATCATTACATTAACCAATCAAATAGA
TGAAAACTGGTATGAAGGAATGATACACGGAGAATCGGGATTCTTCCCCATTAATTACGTGGAAGTGATC
GTGCCTTTACCTCAGTAA

Translation (355 aa):
MDGIFAGIICNQANRCLTWTSQQLFSEKISGAEGTKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNP
AYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLD
INVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMF
NFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAASSVPRREYKPRPVKRSSSELNGVST
TSVVKTTGSNIPMDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI
VPLPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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