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Report for CCDS72945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72945.1 Public Homo sapiens 1 PAQR6 24 110 108 CCDS HistoryNCBI Gene:79957Re-query CCDS DB by CCDS ID:72945.1Re-query CCDS DB by GeneID:79957See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540423.5 ENSP00000443167.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540423.5Link to Ensembl Protein Viewer:ENSP00000443167.2Re-query CCDS DB by Nucleotide ID:ENST00000540423Re-query CCDS DB by Protein ID:ENSP00000443167
Original member Current member EBI ENST00000613336.4 ENSP00000479864.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613336.4Link to Ensembl Protein Viewer:ENSP00000479864.1Re-query CCDS DB by Nucleotide ID:ENST00000613336Re-query CCDS DB by Protein ID:ENSP00000479864
Original member Current member EBI ENST00000623241.3 ENSP00000485607.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623241.3Link to Ensembl Protein Viewer:ENSP00000485607.1Re-query CCDS DB by Nucleotide ID:ENST00000623241Re-query CCDS DB by Protein ID:ENSP00000485607
Original member Current member NCBI NM_001272109.2 NP_001259038.1 Accepted alive Link to Nucleotide Sequence:NM_001272109.2Link to Protein Sequence:NP_001259038.1Re-query CCDS DB by Nucleotide ID:NM_001272109Re-query CCDS DB by Protein ID:NP_001259038Link to BLAST:NP_001259038.1
Original member Current member NCBI NM_001272110.2 NP_001259039.1 Accepted alive Link to Nucleotide Sequence:NM_001272110.2Link to Protein Sequence:NP_001259039.1Re-query CCDS DB by Nucleotide ID:NM_001272110Re-query CCDS DB by Protein ID:NP_001259039Link to BLAST:NP_001259039.1
Original member Current member NCBI NM_001272111.2 NP_001259040.1 Accepted alive Link to Nucleotide Sequence:NM_001272111.2Link to Protein Sequence:NP_001259040.1Re-query CCDS DB by Nucleotide ID:NM_001272111Re-query CCDS DB by Protein ID:NP_001259040Link to BLAST:NP_001259040.1
Original member Current member NCBI NM_001272112.2 NP_001259041.1 Accepted alive Link to Nucleotide Sequence:NM_001272112.2Link to Protein Sequence:NP_001259041.1Re-query CCDS DB by Nucleotide ID:NM_001272112Re-query CCDS DB by Protein ID:NP_001259041Link to BLAST:NP_001259041.1
Original member Current member NCBI NM_001272113.2 NP_001259042.1 Accepted alive Link to Nucleotide Sequence:NM_001272113.2Link to Protein Sequence:NP_001259042.1Re-query CCDS DB by Nucleotide ID:NM_001272113Re-query CCDS DB by Protein ID:NP_001259042Link to BLAST:NP_001259042.1

Chromosomal Locations for CCDS 72945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156243861 156244403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156244761 156244853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCTACCATCTCTTCTGCGCGCTGCTCACTGGCTTCCTCTTCGCCTCCCACCTGCCTGAAAGGCTGGC
ACCAGGACGCTTTGATTACATCGGCCACAGCCACCAGTTATTCCACATCTGTGCAGTGCTGGGCACCCAC
TTCCAGCTGGAGGCAGTGCTGGCTGATATGGGATCACGCAGAGCCTGGCTGGCCACACAGGAACCTGCCC
TGGGCCTGGCAGGCACAGTGGCCACACTGGTCTTGGCTGCAGCTGGGAACCTACTCATTATTGCTGCTTT
CACAGCCACCCTGCTTCGGGCCCCCAGTACATGCCCTCTGCTGCAGGGTGGCCCACTGGAGGGGGGTACC
CAGGCCAAACAACAGTGAGGCCCCATCCCTGACCCTGTCCTGGAGGGGGCAGAGGCCAGGCCCCAGTGCT
GACGAGGAGCCCAGATTTGGGCCTAATCAGGTGGGGACGCATCTCAGCCTGGAACCAACAGGGGCTGAGG
AGAGAGGGCACAGGAGAGAGGGCAGAGAAGAGGAGGGGTGTCTAGGGGGACTGGCAGAGTGTGAGAGGGA
CCGTGAGGGGGCTCTTGATGGGAGTGGAAGAAGTGCTGAGGGTCTGAGAGGGGAGATGCATGCGTGTCCA
GGCTGA

Translation (211 aa):
MATISSARCSLASSSPPTCLKGWHQDALITSATATSYSTSVQCWAPTSSWRQCWLIWDHAEPGWPHRNLP
WAWQAQWPHWSWLQLGTYSLLLLSQPPCFGPPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGPSA
DEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHACP
G


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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