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Report for CCDS6253.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6253.3 Public Homo sapiens 8 OTUD6B 24 110 108 CCDS HistoryNCBI Gene:51633Re-query CCDS DB by CCDS ID:6253.3Re-query CCDS DB by GeneID:51633See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6253.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6253.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404789.8 ENSP00000384190.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404789.8Link to Ensembl Protein Viewer:ENSP00000384190.4Re-query CCDS DB by Nucleotide ID:ENST00000404789Re-query CCDS DB by Protein ID:ENSP00000384190
Original member Current member NCBI NM_016023.5 NP_057107.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016023.5Link to Protein Sequence:NP_057107.4Re-query CCDS DB by Nucleotide ID:NM_016023Re-query CCDS DB by Protein ID:NP_057107Link to BLAST:NP_057107.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057107.4 293 Q8N6M0-1 293 100% 0 0

Chromosomal Locations for CCDS 6253.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91070385 91070466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91071138 91071289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91073831 91073911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91078356 91078668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91080669 91080730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91084008 91084114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91084784 91084868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGAGGCGGTATTGACCGAAGAGCTTGATGAGGAAGAGCAGCTGCTGAGAAGGCATCGCAAAGAGAAGA
AGGAGTTGCAAGCCAAAATTCAGGGCATGAAGAATGCTGTTCCCAAGAATGACAAGAAGAGGAGGAAGCA
ACTCACCGAAGATGTGGCCAAGTTGGAAAAAGAAATGGAACAGAAACATAGAGAGGAACTGGAGCAATTG
AAGCTGACTACTAAGGAGAATAAGATAGATTCTGTTGCTGTTAACATTTCAAACTTGGTGCTTGAGAATC
AGCCACCTCGGATATCAAAAGCACAAAAGAGACGGGAAAAGAAAGCTGCATTGGAAAAGGAGCGAGAAGA
ACGGATAGCTGAAGCTGAAATTGAAAACTTAACAGGAGCCAGACATATGGAAAGTGAGAAACTTGCTCAA
ATATTGGCAGCTAGACAGTTAGAAATTAAACAGATTCCATCTGATGGCCACTGTATGTATAAAGCCATTG
AAGATCAACTGAAAGAAAAGGATTGTGCTCTGACTGTGGTTGCCTTGAGAAGTCAGACCGCTGAGTATAT
GCAAAGCCATGTGGAAGACTTTCTGCCATTTTTAACAAACCCTAATACAGGAGATATGTATACTCCAGAA
GAATTTCAGAAGTACTGTGAAGATATTGTAAACACAGCTGCATGGGGAGGTCAGCTTGAGCTAAGAGCTC
TGTCTCACATTTTACAAACACCAATAGAGATAATACAGGCAGATTCTCCTCCCATTATAGTTGGTGAAGA
ATATTCAAAAAAACCACTAATACTTGTATATATGAGACATGCATATGGCTTAGGAGAACATTATAATTCG
GTTACACGGTTGGTAAACATAGTTACTGAAAATTGCAGCTAA

Translation (293 aa):
MEAVLTEELDEEEQLLRRHRKEKKELQAKIQGMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHREELEQL
KLTTKENKIDSVAVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENLTGARHMESEKLAQ
ILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGDMYTPE
EFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQADSPPIIVGEEYSKKPLILVYMRHAYGLGEHYNS
VTRLVNIVTENCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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