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Report for CCDS1273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1273.1 Public Homo sapiens 1 XCL2 24 110 108 CCDS HistoryNCBI Gene:6846Re-query CCDS DB by CCDS ID:1273.1Re-query CCDS DB by GeneID:6846See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367819.3 ENSP00000356793.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367819.3Link to Ensembl Protein Viewer:ENSP00000356793.2Re-query CCDS DB by Nucleotide ID:ENST00000367819Re-query CCDS DB by Protein ID:ENSP00000356793
Original member Current member NCBI NM_003175.4 NP_003166.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003175.4Link to Protein Sequence:NP_003166.1Re-query CCDS DB by Nucleotide ID:NM_003175Re-query CCDS DB by Protein ID:NP_003166Link to BLAST:NP_003166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003166.1 114 Q9UBD3 114 100% 0 0

Chromosomal Locations for CCDS 1273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168540952 168541120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168541993 168542107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168543904 168543964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGAGACTTCTCATCCTGGCCCTCCTTGGCATCTGCTCTCTCACTGCATACATTGTGGAAGGTGTAGGGA
GTGAAGTCTCACATAGGAGGACCTGTGTGAGCCTCACTACCCAGCGACTGCCAGTTAGCAGAATCAAGAC
CTACACCATCACGGAAGGCTCCTTGAGAGCAGTAATTTTTATTACCAAACGTGGCCTAAAAGTCTGTGCT
GATCCACAAGCCACGTGGGTGAGAGACGTGGTCAGGAGCATGGACAGGAAATCCAACACCAGAAATAACA
TGATCCAGACCAAGCCAACAGGAACCCAGCAATCGACCAATACAGCTGTGACCCTGACTGGCTAG

Translation (114 aa):
MRLLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQRLPVSRIKTYTITEGSLRAVIFITKRGLKVCA
DPQATWVRDVVRSMDRKSNTRNNMIQTKPTGTQQSTNTAVTLTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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