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Report for CCDS53377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53377.1 Public Homo sapiens 1 MEX3A 24 110 108 CCDS HistoryNCBI Gene:92312Re-query CCDS DB by CCDS ID:53377.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000532414.3 ENSP00000432845.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000532414.3Link to Ensembl Protein Viewer:ENSP00000432845.1Re-query CCDS DB by Nucleotide ID:ENST00000532414Re-query CCDS DB by Protein ID:ENSP00000432845
Original member Current member NCBI NM_001093725.2 NP_001087194.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001093725.2Link to Protein Sequence:NP_001087194.1Re-query CCDS DB by Nucleotide ID:NM_001093725Re-query CCDS DB by Protein ID:NP_001087194Link to BLAST:NP_001087194.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087194.1 520 A1L020 520 100% 0 0

Chromosomal Locations for CCDS 53377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156076574 156077682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156081545 156081998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCCTAGTCTAGTGGTATCTGGAATAATGGAAAGAAATGGGGGCTTTGGAGAACTAGGATGTTTCGGGG
GAAGCGCTAAGGACCGAGGGCTGCTGGAAGACGAGCGCGCCCTTCAGCTGGCTCTCGATCAACTCTGCCT
CCTGGGTTTGGGGGAGCCCCCCGCCCCCACGGCGGGCGAGGACGGGGGAGGTGGGGGGGGCGGCGCCCCC
GCGCAGCCGGCCGCCCCCCCGCAGCCGGCCCCGCCGCCGCCGCCCGCGGCGCCCCCGGCCGCCCCGACGG
CGGCCCCCGCAGCGCAGACGCCCCAGCCCCCCACCGCCCCCAAAGGGGCGAGCGACGCCAAGCTCTGCGC
TCTCTACAAAGAGGCCGAGCTGCGCCTGAAGGGCAGCAGCAACACCACGGAGTGTGTTCCCGTGCCCACC
TCCGAGCACGTGGCCGAGATCGTGGGCAGGCAAGGCTGCAAGATTAAGGCCTTGAGGGCCAAGACCAACA
CCTACATCAAGACACCGGTGAGGGGCGAGGAACCAGTGTTCATGGTGACAGGGCGACGGGAGGACGTGGC
CACAGCCCGGCGGGAAATCATCTCAGCAGCGGAGCACTTCTCCATGATCCGTGCCTCCCGCAACAAGTCA
GGCGCCGCCTTTGGTGTGGCTCCTGCTCTGCCCGGCCAGGTGACCATCCGTGTGCGGGTGCCCTACCGCG
TGGTGGGGCTGGTGGTGGGCCCCAAAGGGGCAACCATCAAGCGCATCCAGCAGCAAACCAACACATACAT
TATCACACCAAGCCGTGACCGCGACCCCGTGTTCGAGATCACGGGTGCCCCAGGCAACGTGGAGCGTGCG
CGCGAGGAGATCGAGACGCACATCGCGGTGCGCACTGGCAAGATCCTCGAGTACAACAATGAAAACGACT
TCCTGGCGGGGAGCCCCGACGCAGCAATCGATAGCCGCTACTCCGACGCCTGGCGGGTGCACCAGCCCGG
CTGCAAGCCCCTCTCCACCTTCCGGCAGAACAGCCTGGGCTGCATCGGCGAGTGCGGAGTGGACTCTGGC
TTTGAGGCCCCACGCCTGGGTGAGCAGGGCGGGGACTTTGGCTACGGCGGGTACCTCTTTCCGGGCTATG
GCGTGGGCAAGCAGGATGTGTACTACGGCGTGGCCGAGACTAGCCCCCCGCTGTGGGCGGGCCAGGAGAA
CGCCACGCCCACCTCCGTGCTCTTCTCCTCTGCCTCCTCCTCCTCCTCCTCTTCCGCCAAGGCCCGCGCT
GGGCCCCCGGGCGCACACCGCTCCCCTGCCACTTCCGCGGGACCCGAGCTGGCCGGACTCCCGAGGCGCC
CCCCGGGAGAGCCGCTCCAGGGCTTCTCTAAACTTGGTGGGGGCGGCCTGCGGAGCCCCGGCGGCGGGCG
GGATTGCATGGTCTGCTTTGAGAGCGAAGTGACTGCCGCCCTTGTGCCCTGCGGACACAACCTGTTCTGC
ATGGAGTGTGCAGTACGCATCTGCGAGAGGACGGACCCAGAGTGTCCCGTCTGCCACATCACAGCCACGC
AAGCCATCCGAATATTCTCCTAA

Translation (520 aa):
MPSLVVSGIMERNGGFGELGCFGGSAKDRGLLEDERALQLALDQLCLLGLGEPPAPTAGEDGGGGGGGAP
AQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAPKGASDAKLCALYKEAELRLKGSSNTTECVPVPT
SEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKS
GAAFGVAPALPGQVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERA
REEIETHIAVRTGKILEYNNENDFLAGSPDAAIDSRYSDAWRVHQPGCKPLSTFRQNSLGCIGECGVDSG
FEAPRLGEQGGDFGYGGYLFPGYGVGKQDVYYGVAETSPPLWAGQENATPTSVLFSSASSSSSSSAKARA
GPPGAHRSPATSAGPELAGLPRRPPGEPLQGFSKLGGGGLRSPGGGRDCMVCFESEVTAALVPCGHNLFC
MECAVRICERTDPECPVCHITATQAIRIFS


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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