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Report for CCDS3438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3438.1 Public Homo sapiens 4 CCKAR 24 110 108 CCDS HistoryNCBI Gene:886Re-query CCDS DB by CCDS ID:3438.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295589.4 ENSP00000295589.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295589.4Link to Ensembl Protein Viewer:ENSP00000295589.3Re-query CCDS DB by Nucleotide ID:ENST00000295589Re-query CCDS DB by Protein ID:ENSP00000295589
Original member Current member NCBI NM_000730.3 NP_000721.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000730.3Link to Protein Sequence:NP_000721.1Re-query CCDS DB by Nucleotide ID:NM_000730Re-query CCDS DB by Protein ID:NP_000721Link to BLAST:NP_000721.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000721.1 428 P32238 428 100% 0 0

Chromosomal Locations for CCDS 3438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 26481638 26482170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26483156 26483283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26485637 26485898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26489233 26489484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 26490156 26490267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGGATGTGGTTGACAGCCTTCTTGTGAATGGAAGCAACATCACTCCTCCCTGTGAACTCGGGCTCGAAA
ATGAGACGCTTTTCTGCTTGGATCAGCCCCGTCCTTCCAAAGAGTGGCAGCCAGCGGTGCAGATTCTCTT
GTACTCCTTGATATTCCTGCTCAGCGTGCTGGGAAACACGCTGGTCATCACCGTGCTGATTCGGAACAAG
CGGATGCGGACGGTCACCAACATCTTCCTCCTCTCCCTGGCTGTCAGCGACCTCATGCTCTGTCTCTTCT
GCATGCCGTTCAACCTCATCCCCAATCTGCTCAAGGATTTCATCTTCGGGAGCGCCGTTTGCAAGACCAC
CACCTACTTCATGGGCACCTCTGTGAGTGTATCTACCTTTAATCTGGTAGCCATATCTCTAGAGAGATAT
GGTGCGATTTGCAAACCCTTACAGTCCCGGGTCTGGCAGACAAAATCCCATGCTTTGAAGGTGATTGCTG
CTACCTGGTGCCTTTCCTTTACCATCATGACTCCGTACCCCATTTATAGCAACTTGGTGCCTTTTACCAA
AAATAACAACCAGACCGCGAATATGTGCCGCTTTCTACTGCCAAATGATGTTATGCAGCAGTCCTGGCAC
ACATTCCTGTTACTCATCCTCTTTCTTATTCCTGGAATTGTGATGATGGTGGCATATGGATTAATCTCTT
TGGAACTCTACCAGGGAATAAAATTTGAGGCTAGCCAGAAGAAGTCTGCTAAAGAAAGGAAACCTAGCAC
CACCAGCAGCGGCAAATATGAGGACAGCGATGGGTGTTACCTGCAAAAGACCAGGCCCCCGAGGAAGCTG
GAGCTCCGGCAGCTGTCCACCGGCAGCAGCAGCAGGGCCAACCGCATCCGGAGTAACAGCTCCGCAGCCA
ACCTGATGGCCAAGAAAAGGGTGATCCGCATGCTCATCGTCATCGTGGTCCTCTTCTTCCTGTGCTGGAT
GCCCATCTTCAGCGCCAACGCCTGGCGGGCCTACGACACCGCCTCCGCAGAGCGCCGCCTCTCAGGAACC
CCCATTTCCTTCATCCTCCTCCTGTCCTACACCTCCTCCTGCGTCAACCCCATCATCTACTGCTTCATGA
ACAAACGCTTCCGCCTCGGCTTCATGGCCACCTTCCCCTGCTGCCCCAATCCTGGTCCCCCAGGGGCGAG
GGGAGAGGTGGGGGAGGAGGAGGAAGGCGGGACCACAGGAGCCTCTCTGTCCAGGTTCTCGTACAGCCAT
ATGAGTGCCTCGGTGCCACCCCAGTGA

Translation (428 aa):
MDVVDSLLVNGSNITPPCELGLENETLFCLDQPRPSKEWQPAVQILLYSLIFLLSVLGNTLVITVLIRNK
RMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFGSAVCKTTTYFMGTSVSVSTFNLVAISLERY
GAICKPLQSRVWQTKSHALKVIAATWCLSFTIMTPYPIYSNLVPFTKNNNQTANMCRFLLPNDVMQQSWH
TFLLLILFLIPGIVMMVAYGLISLELYQGIKFEASQKKSAKERKPSTTSSGKYEDSDGCYLQKTRPPRKL
ELRQLSTGSSSRANRIRSNSSAANLMAKKRVIRMLIVIVVLFFLCWMPIFSANAWRAYDTASAERRLSGT
PISFILLLSYTSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPPGARGEVGEEEEGGTTGASLSRFSYSH
MSASVPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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