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Report for CCDS6750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6750.1 Public Homo sapiens 9 TMEFF1 24 110 108 CCDS HistoryNCBI Gene:8577Re-query CCDS DB by CCDS ID:6750.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374879.5 ENSP00000364013.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374879.5Link to Ensembl Protein Viewer:ENSP00000364013.4Re-query CCDS DB by Nucleotide ID:ENST00000374879Re-query CCDS DB by Protein ID:ENSP00000364013
Original member Current member NCBI NM_003692.5 NP_003683.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003692.5Link to Protein Sequence:NP_003683.2Re-query CCDS DB by Nucleotide ID:NM_003692Re-query CCDS DB by Protein ID:NP_003683Link to BLAST:NP_003683.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003683.2 380 Q8IYR6-1 380 100% 0 0

Chromosomal Locations for CCDS 6750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100473545 100473740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100498765 100498874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100509005 100509134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100513307 100513333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100516675 100516771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100547744 100547892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100550095 100550160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100561397 100561520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100572518 100572676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100576516 100576600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGGCGCCGCAGCCGCTGAGGCGCCGCTCCGGCTGCCTGCCGCGCCTCCGCTCGCCTTCTGCTGCTACA
CGTCGGTGCTTCTGCTCTTCGCCTTCTCTCTGCCCGGGAGCCGCGCGTCCAACCAGCCCCCGGGTGGTGG
CGGCGGCAGCGGCGGGGACTGTCCCGGCGGCAAAGGCAAGAGCATCAACTGCTCAGAATTAAATGTGAGG
GAGTCTGACGTAAGAGTTTGTGATGAGTCATCATGTAAATATGGAGGAGTCTGTAAAGAAGATGGAGATG
GTTTGAAATGTGCATGCCAATTTCAGTGCCATACAAATTATATTCCTGTCTGTGGATCAAATGGGGACAC
TTATCAAAATGAATGCTTTCTCAGAAGGGCTGCTTGTAAGCACCAGAAAGAGATAACAGTAATAGCAAGA
GGACCATGCTACTCTGATAATGGATCTGGATCTGGAGAAGGAGAAGAGGAAGGGTCAGGGGCAGAAGTTC
ACAGAAAACACTCCAAGTGTGGACCCTGCAAATATAAAGCTGAGTGTGATGAAGATGCAGAAAATGTTGG
GTGTGTATGTAATATAGATTGCAGTGGATACAGTTTTAATCCTGTGTGTGCTTCTGATGGGAGTTCCTAT
AACAATCCCTGTTTTGTTCGAGAAGCATCTTGTATAAAGCAAGAACAAATTGATATAAGGCATCTTGGTC
ATTGCACAGATACAGATGACACTAGTTTGTTGGGAAAGAAAGATGATGGACTACAATATCGACCAGATGT
GAAAGATGCTAGTGATCAAAGAGAAGATGTTTATATTGGAAACCACATGCCTTGCCCTGAAAACCTCAAT
GGTTACTGCATCCATGGAAAATGTGAATTCATCTATTCTACTCAGAAGGCTTCTTGTAGATGTGAATCTG
GCTACACTGGACAGCACTGTGAAAAGACAGACTTTAGTATTCTCTATGTAGTGCCAAGTAGGCAAAAGCT
CACTCATGTTCTTATTGCAGCAATTATTGGAGCTGTACAGATTGCCATCATAGTAGCAATTGTAATGTGC
ATAACAAGAAAATGCCCCAAAAACAATAGAGGACGTCGACAGAAGCAAAACCTAGGTCATTTTACTTCAG
ATACGTCATCCAGAATGGTTTAA

Translation (380 aa):
MGAAAAEAPLRLPAAPPLAFCCYTSVLLLFAFSLPGSRASNQPPGGGGGSGGDCPGGKGKSINCSELNVR
ESDVRVCDESSCKYGGVCKEDGDGLKCACQFQCHTNYIPVCGSNGDTYQNECFLRRAACKHQKEITVIAR
GPCYSDNGSGSGEGEEEGSGAEVHRKHSKCGPCKYKAECDEDAENVGCVCNIDCSGYSFNPVCASDGSSY
NNPCFVREASCIKQEQIDIRHLGHCTDTDDTSLLGKKDDGLQYRPDVKDASDQREDVYIGNHMPCPENLN
GYCIHGKCEFIYSTQKASCRCESGYTGQHCEKTDFSILYVVPSRQKLTHVLIAAIIGAVQIAIIVAIVMC
ITRKCPKNNRGRRQKQNLGHFTSDTSSRMV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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