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Report for CCDS42165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42165.1 Public Homo sapiens 16 MT4 24 110 108 CCDS HistoryNCBI Gene:84560Re-query CCDS DB by CCDS ID:42165.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42165.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219162.4 ENSP00000219162.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219162.4Link to Ensembl Protein Viewer:ENSP00000219162.3Re-query CCDS DB by Nucleotide ID:ENST00000219162Re-query CCDS DB by Protein ID:ENSP00000219162
Original member Current member NCBI NM_032935.3 NP_116324.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032935.3Link to Protein Sequence:NP_116324.2Re-query CCDS DB by Nucleotide ID:NM_032935Re-query CCDS DB by Protein ID:NP_116324Link to BLAST:NP_116324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116324.2 62 P47944 62 100% 0 0

Chromosomal Locations for CCDS 42165.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56565129 56565159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56567751 56567816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56568841 56568932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGGACCCCAGGGAATGTGTCTGCATGTCTGGAGGAATCTGCATGTGTGGAGACAACTGCAAATGCACAA
CCTGCAACTGTAAAACATATTGGAAGAGCTGCTGTCCCTGCTGCCCCCCGGGCTGTGCCAAATGTGCCCG
GGGCTGCATCTGCAAAGGAGGCTCAGACAAGTGCAGCTGCTGCCCATGA

Translation (62 aa):
MDPRECVCMSGGICMCGDNCKCTTCNCKTYWKSCCPCCPPGCAKCARGCICKGGSDKCSCCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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