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Report for CCDS34075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34075.1 Public Homo sapiens 4 ARHGAP10 24 110 108 CCDS HistoryNCBI Gene:79658Re-query CCDS DB by CCDS ID:34075.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336498.8 ENSP00000336923.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336498.8Link to Ensembl Protein Viewer:ENSP00000336923.3Re-query CCDS DB by Nucleotide ID:ENST00000336498Re-query CCDS DB by Protein ID:ENSP00000336923
Original member Current member NCBI NM_024605.4 NP_078881.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024605.4Link to Protein Sequence:NP_078881.3Re-query CCDS DB by Nucleotide ID:NM_024605Re-query CCDS DB by Protein ID:NP_078881Link to BLAST:NP_078881.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078881.3 786 A1A4S6 786 100% 0 0

Chromosomal Locations for CCDS 34075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147732302 147732455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147822727 147822822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147822896 147822957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147847151 147847222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147857553 147857654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147864846 147864956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147866712 147866816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147875021 147875150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147879232 147879338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147881838 147881932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147906638 147906719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147909732 147909777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147913074 147913139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147939825 147939899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147946617 147946704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147955316 147955374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147965024 147965129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147966680 147966839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148023263 148023413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148046892 148047051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148063148 148063300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148064416 148064507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148071993 148072081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2361 nt):
ATGGGGCTGCAGCCCCTGGAGTTCAGCGACTGCTACCTCGACAGCCCGTGGTTCCGGGAGAGGATCCGCG
CTCACGAAGCGGAACTCGAGAGGACCAACAAGTTCATCAAAGAGCTCATTAAGGACGGGAAGAACCTCAT
CGCTGCGACGAAAAGTCTGTCAGTGGCCCAGCGGAAGTTTGCTCATTCACTCAGAGACTTTAAGTTTGAG
TTTATCGGTGATGCTGTGACAGATGATGAACGATGCATAGATGCTTCCTTACGTGAATTTTCAAATTTTT
TGAAGAATCTGGAGGAACAGAGAGAAATTATGGCATTAAGTGTAACTGAAACCCTGATTAAACCCTTGGA
AAAATTCAGAAAAGAGCAACTTGGAGCTGTAAAGGAAGAAAAAAAGAAGTTTGACAAAGAGACAGAAAAG
AATTATAGTCTAATTGATAAACATTTGAATTTATCAGCAAAAAAGAAAGACTCACATTTACAAGAGGCAG
ATATCCAAGTAGAGCAGAACCGGCAACACTTCTATGAACTGTCTCTCGAGTATGTGTGTAAGCTGCAGGA
AATCCAAGAAAGAAAGAAGTTTGAGTTTGTGGAACCTATGCTGTCATTTTTTCAGGGGATGTTTACCTTC
TATCATCAGGGCCATGAACTTGCCAAAGACTTCAATCACTACAAAATGGAACTACAGATCAACATTCAGA
ATACACGGAATCGATTTGAAGGAACAAGGTCAGAAGTGGAAGAGCTCATGAACAAAATCAGACAGAATCC
CAAGGACCACAAACGAGCAAGTCAGTTTACAGCCGAAGGCTACCTGTATGTCCAGGAAAAAAGGCCTGCT
CCGTTTGGTTCCAGTTGGGTCAAACACTATTGCATGTATCGAAAAGCAGCAAAGAAGTTCAACATGATCC
CATTTGAGCACAGATCTGGAGGGAAACTTGGGGACGGAGAGGTGTTCTTTTTGAAAGAATGTACCAAGAG
GCATACTGACTCCATTGACAGAAGGTTTTGTTTTGACATAGAAGCTGCTGATCGGCCTGGCGTTTCCTTG
ACCATGCAGGCATTTTCCGAAGAGGAAAGGAAGCAGTGGTTGGAAGCTCTGGGTGGAAAGGAAGCTCTGT
CCCATAGTTTTAATACAGCCATCATCCCAAGACCAGAAGGAAATGCACAGTTGGATAAGATGGGGTTCAC
AATTATCAGAAAATGCATCAGTGCCGTTGAAACACGAGGTATAAATGACCAAGGATTGTACAGAGTTGTG
GGGGTGAGTTCAAAGGTCCAGAGACTTCTGAGTATGTTGATGGATGTAAAAACATGCAATGAGGTGGACC
TGGAGAATTCTGCAGATTGGGAAGTGAAGACAATAACAAGTGCCTTGAAACAGTATTTGAGGAGTCTTCC
AGAGCCTCTCATGACCTATGAGTTACATGGAGATTTCATTGTTCCAGCCAAAAGCGGCAGCCCAGAATCT
CGTGTTAATGCGATCCATTTCTTGGTACACAAACTGCCAGAGAAGAATAAAGAGATGTTGGATATTTTGG
TGAAACACTTAACAAATGTTTCAAATCACTCCAAGCAGAACCTGATGACTGTGGCAAACTTAGGAGTGGT
GTTTGGACCAACTCTGATGAGGCCACAGGAAGAAACTGTCGCTGCCCTCATGGACTTGAAGTTTCAGAAT
ATTGTTGTGGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGGACGCCGCCCGATACTACATTCCCTG
AGCCCACCTGCCTGTCAGCATCACCCCCAAATGCGCCACCAAGGCAGTCGAAGAGACAAGGCCAGAGAAC
CAAGAGGCCCGTGGCCGTCTACAATCTTTGTCTGGAGCTGGAAGATGGTGACAATCCTTACCCTTCCAAG
GAGGACACCCCTACCAGCAGTCTGGACTCACTTTCCTCCCCGTCTCCCGTGACTACAGCTGTCCCTGGGC
CTCCTGGACCAGACAAAAACCACCTTCTGGCAGATGGAGGGAGCTTTGGAGACTGGGCATCCACTATCCC
AGGCCAGACCCGATCGTCTATGGTCCAGTGGCTTAACCCACAGTCTCCAACCACAACAAGCTCCAACTCA
GCTGTGACACCTCTTTCACCCGGGTCGTCCCCTTTCCCCTTTTCTCCTCCTGCTACTGTAGCGGACAAGC
CACCTGAAAGCATCCGCAGTCGGAAGGCTCGAGCCGTGTATCCGTGTGAAGCAGAACACAGCTCGGAATT
ATCTTTTGAAATAGGAGCAATTTTTGAGGATGTACAAACCTCCAGGGAACCTGGCTGGCTAGAAGGGACT
CTGAACGGCAAGAGGGGGCTGATTCCACAGAACTACGTCAAGCTGCTGTAG

Translation (786 aa):
MGLQPLEFSDCYLDSPWFRERIRAHEAELERTNKFIKELIKDGKNLIAATKSLSVAQRKFAHSLRDFKFE
FIGDAVTDDERCIDASLREFSNFLKNLEEQREIMALSVTETLIKPLEKFRKEQLGAVKEEKKKFDKETEK
NYSLIDKHLNLSAKKKDSHLQEADIQVEQNRQHFYELSLEYVCKLQEIQERKKFEFVEPMLSFFQGMFTF
YHQGHELAKDFNHYKMELQINIQNTRNRFEGTRSEVEELMNKIRQNPKDHKRASQFTAEGYLYVQEKRPA
PFGSSWVKHYCMYRKAAKKFNMIPFEHRSGGKLGDGEVFFLKECTKRHTDSIDRRFCFDIEAADRPGVSL
TMQAFSEEERKQWLEALGGKEALSHSFNTAIIPRPEGNAQLDKMGFTIIRKCISAVETRGINDQGLYRVV
GVSSKVQRLLSMLMDVKTCNEVDLENSADWEVKTITSALKQYLRSLPEPLMTYELHGDFIVPAKSGSPES
RVNAIHFLVHKLPEKNKEMLDILVKHLTNVSNHSKQNLMTVANLGVVFGPTLMRPQEETVAALMDLKFQN
IVVEILIENHEKIFRTPPDTTFPEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEDGDNPYPSK
EDTPTSSLDSLSSPSPVTTAVPGPPGPDKNHLLADGGSFGDWASTIPGQTRSSMVQWLNPQSPTTTSSNS
AVTPLSPGSSPFPFSPPATVADKPPESIRSRKARAVYPCEAEHSSELSFEIGAIFEDVQTSREPGWLEGT
LNGKRGLIPQNYVKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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