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Report for CCDS4296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4296.1 Public Homo sapiens 5 PCYOX1L 24 110 108 CCDS HistoryNCBI Gene:78991Re-query CCDS DB by CCDS ID:4296.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274569.9 ENSP00000274569.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274569.9Link to Ensembl Protein Viewer:ENSP00000274569.4Re-query CCDS DB by Nucleotide ID:ENST00000274569Re-query CCDS DB by Protein ID:ENSP00000274569
Original member Current member NCBI NM_024028.4 NP_076933.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024028.4Link to Protein Sequence:NP_076933.3Re-query CCDS DB by Nucleotide ID:NM_024028Re-query CCDS DB by Protein ID:NP_076933Link to BLAST:NP_076933.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076933.3 494 Q8NBM8-1 494 100% 0 0

Chromosomal Locations for CCDS 4296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149358069 149358156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149362637 149362843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149364036 149364210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149365942 149366153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149367360 149367500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149367993 149368654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGCCCGCGCAGCCCCGCTGCTCGCCGCGTTGACCGCGCTCCTCGCCGCCGCCGCTGCTGGCGGAGATG
CCCCGCCGGGCAAAATCGCGGTGGTTGGGGCTGGGATTGGGGGCTCTGCTGTGGCCCATTTTCTCCAGCA
GCACTTTGGACCTCGGGTGCAGATCGACGTGTACGAGAAGGGAACCGTGGGTGGCCGCTTGGCCACCATC
TCAGTCAACAAGCAGCACTATGAGAGCGGGGCTGCCTCCTTCCACTCCCTGAGCCTGCACATGCAGGACT
TCGTCAAGCTGCTGGGGCTGAGGCACCGGCGCGAGGTGGTGGGCAGGAGCGCCATCTTCGGCGGGGAGCA
CTTCATGCTGGAGGAGACTGACTGGTACCTGCTGAACCTCTTCCGCCTCTGGTGGCACTATGGCATCAGC
TTCCTGAGGCTGCAGATGTGGGTGGAGGAGGTCATGGAGAAGTTCATGAGGATCTATAAGTACCAGGCCC
ACGGCTATGCCTTCTCGGGTGTGGAGGAGCTGCTCTACTCACTGGGGGAGTCCACCTTTGTTAACATGAC
CCAGCACTCTGTGGCTGAGTCCCTGCTGCAGGTGGGCGTCACGCAGCGCTTTATTGATGATGTCGTTTCT
GCTGTCCTGCGGGCCAGCTATGGCCAGTCAGCAGCGATGCCCGCCTTTGCAGGAGCCATGTCACTAGCCG
GGGCCCAAGGCAGCCTGTGGTCTGTGGAAGGAGGCAATAAGCTGGTTTGTTCCGGTTTGCTGAAGCTCAC
CAAGGCCAATGTGATCCATGCCACAGTGACCTCTGTGACCCTGCACAGCACAGAGGGGAAAGCCCTGTAC
CAGGTGGCGTATGAGAATGAGGTAGGCAACAGCTCTGACTTCTATGACATCGTGGTCATCGCCACCCCCC
TGCACCTGGACAACAGCAGCAGCAACTTAACCTTTGCAGGCTTCCACCCGCCCATTGATGACGTGCAGGG
CTCTTTCCAGCCCACCGTCGTCTCCTTGGTCCACGGCTACCTCAACTCGTCCTACTTCGGTTTCCCAGAC
CCTAAGCTTTTCCCCTTTGCCAACATCCTTACCACAGATTTCCCCAGCTTCTTCTGCACTCTGGACAACA
TCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCA
GTCCCCCAAGCCCCTCTTTCGGACCCAGCTAAAGACCCTGTTCCGTTCCTATTACTCAGTGCAGACAGCT
GAGTGGCAGGCCCATCCCCTCTATGGCTCCCGCCCCACGCTCCCGAGGTTTGCACTCCATGACCAGCTCT
TCTACCTCAATGCCCTGGAGTGGGCGGCCAGCTCCGTGGAGGTGATGGCCGTGGCTGCCAAGAATGTGGC
CTTGCTGGCTTACAACCGCTGGTACCAGGACCTAGACAAGATTGATCAAAAAGATTTGATGCACAAGGTC
AAGACTGAACTGTGA

Translation (494 aa):
MARAAPLLAALTALLAAAAAGGDAPPGKIAVVGAGIGGSAVAHFLQQHFGPRVQIDVYEKGTVGGRLATI
SVNKQHYESGAASFHSLSLHMQDFVKLLGLRHRREVVGRSAIFGGEHFMLEETDWYLLNLFRLWWHYGIS
FLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGESTFVNMTQHSVAESLLQVGVTQRFIDDVVS
AVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKLVCSGLLKLTKANVIHATVTSVTLHSTEGKALY
QVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVVSLVHGYLNSSYFGFPD
PKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTA
EWQAHPLYGSRPTLPRFALHDQLFYLNALEWAASSVEVMAVAAKNVALLAYNRWYQDLDKIDQKDLMHKV
KTEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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