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Report for CCDS41300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41300.1 Public Homo sapiens 1 ZSCAN20 24 110 108 CCDS HistoryNCBI Gene:7579Re-query CCDS DB by CCDS ID:41300.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361328.7 ENSP00000355053.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361328.7Link to Ensembl Protein Viewer:ENSP00000355053.3Re-query CCDS DB by Nucleotide ID:ENST00000361328Re-query CCDS DB by Protein ID:ENSP00000355053
Original member Current member EBI ENST00000684572.1 ENSP00000507139.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684572.1Link to Ensembl Protein Viewer:ENSP00000507139.1Re-query CCDS DB by Nucleotide ID:ENST00000684572Re-query CCDS DB by Protein ID:ENSP00000507139
Original member Current member NCBI NM_001377376.1 NP_001364305.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377376.1Link to Protein Sequence:NP_001364305.1Re-query CCDS DB by Nucleotide ID:NM_001377376Re-query CCDS DB by Protein ID:NP_001364305Link to BLAST:NP_001364305.1
Original member Current member NCBI NM_145238.6 NP_660281.3 Accepted alive Link to Nucleotide Sequence:NM_145238.6Link to Protein Sequence:NP_660281.3Re-query CCDS DB by Nucleotide ID:NM_145238Re-query CCDS DB by Protein ID:NP_660281Link to BLAST:NP_660281.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364305.1 1043 P17040-1 1043 100% 0 0
NP_660281.3 1043 P17040-1 1043 100% 0 0

Chromosomal Locations for CCDS 41300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33479289 33479705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33488465 33488651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33489115 33489191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33489518 33489602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33491025 33491702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33493187 33493615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33494218 33495476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3132 nt):
ATGGCTATGGCCCTGGAATTGCAAGCCCAGGCATCTCCGCAGCCAGAGCCTGAAGAACTCCTGATTGTGA
AACTGGAAGAGGACTCTTGGGGATCAGAATCCAAACTCTGGGAGAAGGACCGTGGCTCTGTCTCTGGCCC
AGAGGCCTCCCGCCAGCGCTTCAGGCAATTCCAATACAGGGATGCAGCTGGACCCCACGAGGCCTTCAGC
CAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGGCCGGAGATCCGTCTCAAAGAGCAGATCCTGGAGCTGC
TCGTGCTGGAGCAGTTCCTGACTATCTTGCCTAGGGAGGTCCAGACCTGGGTGCAGGCACGCCACCCTGA
GAGTGGTGAGGAGGCTGTGGCCTTGGTGGAGGATTGGCACCGAGAGACCAGGACTGCAGGACAGTCGGGA
CTGGAATTGCATACAGAAGAGACCAGGCCCTTAAAGACAGGGGAAGAAGCTCAGAGCTTCCAGCTGCAGC
CAGTGGATCCCTGGCCTGAGGGACAGTCCCAGAAGAAGGGGGTGAAGAATACATGCCCTGACCTTCCCAA
TCACCTAAATGCCGAGGTGGCACCACAGCCTTTGAAAGAGAGTGCTGTCCTCACTCCCCGAGTCCCTACT
CTCCCAAAGATGGGGAGCGTTGGAGATTGGGAGGTGACAGCTGAGTCCCAGGAAGCCCTGGGCCCTGGCA
AACATGCTGAGAAGGAGCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACAGCGTGTGCCTGGGAGT
TCCAGTTTCAAAACCAAGTAATACCTCCGAGAAAGAGCAAGGACCAGAGTTTTGGGGTCTAAGTCTTATA
AATTCTGGGAAAAGGAGCACTGCAGATTACAGCCTGGATAATGAGCCAGCTCAGGCATTGACCTGGAGGG
ATTCAAGAGCCTGGGAGGAACAATACCAGTGGGATGTGGAGGACATGAAGGTGTCAGGTGTTCACTGGGG
CTATGAGGAGACCAAGACTTTCCTGGCAATTTTGAGTGAATCTCCTTTCTCTGAAAAGCTCCGGACTTGT
CACCAGAACCGCCAGGTATATCGGGCCATTGCAGAGCAGCTAAGGGCAAGGGGCTTCCTGCGGACACTGG
AGCAATGTCGCTATAGGGTCAAAAACCTCCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCACCAGG
TACCTGCCCCTTCTATGAGGAGCTGGAGGCCCTGGTCAGGGCTCGGACAGCCATCAGAGCCACAGATGGC
CCAGGAGAGGCCGTGGCACTTCCCAGGCTCGGGTATAGTGACGCAGAGATGGATGAGCAGGAGGAAGGGG
GCTGGGATCCTGAAGAAATGGCAGAAGACTGTAACGGTGCTGGCCTGGTCAATGTTGAGTCTACCCAGGG
GCCCAGGATTGCAGGGGCCCCAGCTCTGTTCCAGAGTCGTATTGCAGGTGTGCACTGGGGCTATGAGGAG
ACCAAGGCCTTCCTGGCAATTCTCAGTGAGTCCCCATTCTCGGAAAAGCTTCGTACCTGTCACCAGAACA
GCCAGGTGTACCGGGCCATTGCAGAGCGGCTGTGTGCTCTGGGCTTCCTGCGGACACTGGAGCAGTGTCG
CTACAGATTCAAAAACCTCCTTCGAAGCTACCGGAAAGCCAAGAGCAGCCACCCACCAGGGACATGCCCT
TTCTATGAGGAACTGGACTCGCTGATGAGGGCTCGGGCTGCAGTCAGGGCCATGGGGACTGTCCGAGAGG
CTGCAGGTCTCCCTAGGTGTGGGCAGAGTAGTGCTGAGACTGATGCCCAGGAGGCCTGGGGTGAAGTGGC
CAATGAAGATGCTGTCAAACCTTCAACCTTGTGTCCTAAAGCCCCAGACATGGGTTTTGAAATGAGGCAT
GAGGATGAAGACCAGATTTCAGAGCAGGACATTTTTGAGGGTTTGCCTGGAGCCTTATCAAAATGTCCTA
CAGAAGCTGTTTGCCAACCTCTTGACTGGGGAGAAGACAGTGAAAATGAAAATGAAGATGAAGGGCAGTG
GGGAAATCCCTCACAGGAACAGTGGCAAGAAAGTTCTTCTGAAGAGGACTTAGAAAAACTTATTGACCAT
CAAGGCCTGTACCTTGCAGAGAAACCCTACAAGTGTGACACATGCATGAAGAGCTTCAGTCGGAGCTCCC
ACTTCATTGCCCATCAGCGAATCCACACAGGTGAGAAGCCCTACAAATGCCTTGAATGTGGAAAAAACTT
TAGTGACCGCTCTAACCTCAATACCCATCAGAGAATCCACACTGGAGAGAAGCCCTATAAATGCCTTGAA
TGTGGGAAAAGCTTTAGTGACCATTCTAATCTCATCACTCACCAGAGAATTCACACGGGGGAAAAGCCCT
ATAAATGTGGAGAATGTTGGAAAAGCTTCAACCAGAGCTCAAACCTTCTGAAACATCAGAGAATCCACTT
GGGAGGAAATCCTGACCAGTGTAGTGAGCCTGGGGGAAACTTTGCCCAAAGCCCATCTTTTAGTGCTCAC
TGGAGGAATTCTACAGAAGAGACAGCTCCTGAACAACCTCAAAGTATCAGTAAGGACTTGAATTCTCCTG
GACCACACAGCACAAACTCAGGGGAGAAACTTTATGAGTGTTCTGAATGTGGAAGAAGCTTCTCTAAGAG
CTCTGCCCTCATTAGTCACCAAAGAATCCATACGGGAGAGAAACCATATGAATGTGCCGAATGTGGGAAA
AGCTTCAGTAAGAGCTCCACCCTGGCCAACCACCAGCGCACCCACACTGGAGAGAAGCCGTATAAATGTG
TGGACTGTGGGAAGTGCTTCAGTGAGCGCTCCAAGCTCATCACACACCAGAGAGTGCACACAGGAGAGAA
GCCCTACAAATGCCTTGAGTGTGGAAAATTCTTCCGTGACCGTTCTAACCTCATTACTCACCAGAGGATT
CATACGGGAGAGAAGCCGTATAAGTGCAGAGAGTGTGGGAAATGCTTTAACCAGAGCTCCAGTCTTATTA
TTCACCAGAGAATCCACACAGGGGAGAAACCCTACAAGTGCACAGAGTGTGGCAAAGACTTCAACAACAG
TTCCCACTTCAGTGCTCACCGGAGAACCCATGCAGGAGGGAAGGCGTCGTAG

Translation (1043 aa):
MAMALELQAQASPQPEPEELLIVKLEEDSWGSESKLWEKDRGSVSGPEASRQRFRQFQYRDAAGPHEAFS
QLWALCCRWLRPEIRLKEQILELLVLEQFLTILPREVQTWVQARHPESGEEAVALVEDWHRETRTAGQSG
LELHTEETRPLKTGEEAQSFQLQPVDPWPEGQSQKKGVKNTCPDLPNHLNAEVAPQPLKESAVLTPRVPT
LPKMGSVGDWEVTAESQEALGPGKHAEKELCKDPPGDDCGNSVCLGVPVSKPSNTSEKEQGPEFWGLSLI
NSGKRSTADYSLDNEPAQALTWRDSRAWEEQYQWDVEDMKVSGVHWGYEETKTFLAILSESPFSEKLRTC
HQNRQVYRAIAEQLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRATDG
PGEAVALPRLGYSDAEMDEQEEGGWDPEEMAEDCNGAGLVNVESTQGPRIAGAPALFQSRIAGVHWGYEE
TKAFLAILSESPFSEKLRTCHQNSQVYRAIAERLCALGFLRTLEQCRYRFKNLLRSYRKAKSSHPPGTCP
FYEELDSLMRARAAVRAMGTVREAAGLPRCGQSSAETDAQEAWGEVANEDAVKPSTLCPKAPDMGFEMRH
EDEDQISEQDIFEGLPGALSKCPTEAVCQPLDWGEDSENENEDEGQWGNPSQEQWQESSSEEDLEKLIDH
QGLYLAEKPYKCDTCMKSFSRSSHFIAHQRIHTGEKPYKCLECGKNFSDRSNLNTHQRIHTGEKPYKCLE
CGKSFSDHSNLITHQRIHTGEKPYKCGECWKSFNQSSNLLKHQRIHLGGNPDQCSEPGGNFAQSPSFSAH
WRNSTEETAPEQPQSISKDLNSPGPHSTNSGEKLYECSECGRSFSKSSALISHQRIHTGEKPYECAECGK
SFSKSSTLANHQRTHTGEKPYKCVDCGKCFSERSKLITHQRVHTGEKPYKCLECGKFFRDRSNLITHQRI
HTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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