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Report for CCDS11837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11837.1 Public Homo sapiens 18 ZBTB14 24 110 108 CCDS HistoryNCBI Gene:7541Re-query CCDS DB by CCDS ID:11837.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11837.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357006.8 ENSP00000349503.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357006.8Link to Ensembl Protein Viewer:ENSP00000349503.4Re-query CCDS DB by Nucleotide ID:ENST00000357006Re-query CCDS DB by Protein ID:ENSP00000349503
Original member Current member EBI ENST00000400143.7 ENSP00000383009.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400143.7Link to Ensembl Protein Viewer:ENSP00000383009.3Re-query CCDS DB by Nucleotide ID:ENST00000400143Re-query CCDS DB by Protein ID:ENSP00000383009
Original member Current member EBI ENST00000615385.4 ENSP00000478971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615385.4Link to Ensembl Protein Viewer:ENSP00000478971.1Re-query CCDS DB by Nucleotide ID:ENST00000615385Re-query CCDS DB by Protein ID:ENSP00000478971
Original member Current member EBI ENST00000614697.4 ENSP00000484129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614697.4Link to Ensembl Protein Viewer:ENSP00000484129.1Re-query CCDS DB by Nucleotide ID:ENST00000614697Re-query CCDS DB by Protein ID:ENSP00000484129
Original member Current member EBI ENST00000651870.1 ENSP00000499212.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651870.1Link to Ensembl Protein Viewer:ENSP00000499212.1Re-query CCDS DB by Nucleotide ID:ENST00000651870Re-query CCDS DB by Protein ID:ENSP00000499212
Original member Current member NCBI NM_001143823.3 NP_001137295.1 Accepted alive Link to Nucleotide Sequence:NM_001143823.3Link to Protein Sequence:NP_001137295.1Re-query CCDS DB by Nucleotide ID:NM_001143823Re-query CCDS DB by Protein ID:NP_001137295Link to BLAST:NP_001137295.1
Original member Current member NCBI NM_001243702.2 NP_001230631.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001243702.2Link to Protein Sequence:NP_001230631.1Re-query CCDS DB by Nucleotide ID:NM_001243702Re-query CCDS DB by Protein ID:NP_001230631Link to BLAST:NP_001230631.1
Original member Current member NCBI NM_001243704.2 NP_001230633.1 Accepted alive Link to Nucleotide Sequence:NM_001243704.2Link to Protein Sequence:NP_001230633.1Re-query CCDS DB by Nucleotide ID:NM_001243704Re-query CCDS DB by Protein ID:NP_001230633Link to BLAST:NP_001230633.1
Original member Current member NCBI NM_003409.5 NP_003400.2 Accepted alive Link to Nucleotide Sequence:NM_003409.5Link to Protein Sequence:NP_003400.2Re-query CCDS DB by Nucleotide ID:NM_003409Re-query CCDS DB by Protein ID:NP_003400Link to BLAST:NP_003400.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137295.1 449 O43829 449 100% 0 0
NP_001230631.1 449 O43829 449 100% 0 0
NP_001230633.1 449 O43829 449 100% 0 0
NP_003400.2 449 O43829 449 100% 0 0

Chromosomal Locations for CCDS 11837.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5290858 5292204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5293244 5293246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGAGTTTTTCATCAGTATGTCTGAAACCATTAAATATAATGACGATGATCATAAAACTCTGTTTCTGA
AAACACTAAATGAACAACGCCTGGAAGGAGAATTTTGTGATATTGCTATTGTGGTTGAGGATGTGAAATT
CAGAGCACACAGATGTGTTCTTGCTGCCTGCAGCACTTACTTTAAAAAGCTTTTCAAGAAGCTTGAGGTT
GATAGTTCTTCGGTCATAGAAATAGATTTTCTTCGTTCTGATATATTTGAAGAGGTCCTGAACTACATGT
ACACAGCAAAGATTTCCGTGAAAAAAGAAGATGTTAACTTAATGATGTCATCGGGTCAGATTCTTGGTAT
CCGATTTTTGGATAAACTGTGTTCTCAGAAGCGTGATGTGTCCAGTCCCGATGAAAACAATGGTCAGTCC
AAAAGTAAGTATTGCCTTAAAATAAATCGCCCCATTGGAGATGCTGCTGACACCCAGGATGATGATGTAG
AGGAAATCGGGGATCAGGATGACAGTCCTTCTGATGACACAGTAGAAGGCACACCCCCGAGTCAGGAGGA
CGGCAAGTCGCCCACCACAACGCTCAGGGTTCAGGAAGCGATCCTGAAAGAGCTGGGGAGTGAGGAAGTT
CGGAAGGTCAATTGCTACGGCCAGGAAGTAGAATCCATGGAGACCCCAGAATCAAAAGACTTGGGGTCCC
AGACCCCTCAAGCCTTAACATTTAATGATGGGATGAGTGAAGTGAAAGATGAACAGACACCAGGCTGGAC
AACAGCCGCCAGTGACATGAAGTTTGAGTATTTGCTTTATGGTCACCATCGGGAGCAGATTGCCTGCCAG
GCGTGTGGGAAGACGTTTTCTGATGAAGGCAGATTGAGGAAGCATGAGAAACTCCACACGGCGGACAGGC
CATTTGTTTGTGAAATGTGCACAAAAGGTTTCACCACACAGGCCCACCTGAAAGAACACCTAAAAATCCA
CACAGGATATAAGCCCTATAGCTGTGAGGTGTGTGGAAAATCATTTATCCGTGCCCCAGACTTAAAGAAG
CATGAGAGAGTTCACAGTAATGAAAGACCGTTTGCGTGCCACATGTGTGACAAAGCCTTCAAACACAAGT
CTCACCTCAAGGATCATGAAAGAAGACACAGAGGGGAAAAGCCTTTTGTGTGTGGCTCCTGCACCAAGGC
ATTTGCCAAGGCATCTGATCTGAAAAGGCACGAGAACAATATGCACAGTGAAAGGAAGCAGGTTACCCCC
AGTGCCATCCAGAGCGAGACAGAACAGTTGCAGGCGGCAGCGATGGCTGCGGAAGCAGAACAGCAGCTGG
AGACGATAGCCTGTAGCTAG

Translation (449 aa):
MEFFISMSETIKYNDDDHKTLFLKTLNEQRLEGEFCDIAIVVEDVKFRAHRCVLAACSTYFKKLFKKLEV
DSSSVIEIDFLRSDIFEEVLNYMYTAKISVKKEDVNLMMSSGQILGIRFLDKLCSQKRDVSSPDENNGQS
KSKYCLKINRPIGDAADTQDDDVEEIGDQDDSPSDDTVEGTPPSQEDGKSPTTTLRVQEAILKELGSEEV
RKVNCYGQEVESMETPESKDLGSQTPQALTFNDGMSEVKDEQTPGWTTAASDMKFEYLLYGHHREQIACQ
ACGKTFSDEGRLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYSCEVCGKSFIRAPDLKK
HERVHSNERPFACHMCDKAFKHKSHLKDHERRHRGEKPFVCGSCTKAFAKASDLKRHENNMHSERKQVTP
SAIQSETEQLQAAAMAAEAEQQLETIACS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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