NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8404.1 Public Homo sapiens 11 UPK2 24 110 108 CCDS HistoryNCBI Gene:7379Re-query CCDS DB by CCDS ID:8404.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264031.3 ENSP00000264031.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264031.3Link to Ensembl Protein Viewer:ENSP00000264031.2Re-query CCDS DB by Nucleotide ID:ENST00000264031Re-query CCDS DB by Protein ID:ENSP00000264031
Original member Current member NCBI NM_006760.4 NP_006751.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006760.4Link to Protein Sequence:NP_006751.1Re-query CCDS DB by Nucleotide ID:NM_006760Re-query CCDS DB by Protein ID:NP_006751Link to BLAST:NP_006751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006751.1 184 O00526 184 100% 0 0

Chromosomal Locations for CCDS 8404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118956351 118956426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118956883 118957014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118957208 118957346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118957598 118957668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118958097 118958233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCACCCCTGCTGCCCATCCGGACCTTGCCCTTGATCCTGATTCTGCTGGCTCTGCTGTCCCCAGGGG
CTGCAGACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCCCCGGCGCTAACGGAGAGCCTGCTGGTTGC
CTTGCCCCCCTGTCACCTCACAGGAGGCAATGCCACACTGATGGTCCGGAGAGCCAATGACAGCAAAGTG
GTGACGTCCAGCTTTGTGGTGCCTCCGTGCCGTGGGCGCAGGGAACTGGTGAGTGTGGTGGACAGTGGTG
CTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGGTGACAAACCTCGTGCCAGGAACCAAATTCTACAT
TTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGA
AGGAACATGGAATCCATTGGGCTGGGTATGGCCCGCACAGGGGGCATGGTGGTCATCACGGTGCTGCTCT
CTGTCGCCATGTTCCTGCTGGTGCTGGGCTTCATCATTGCCCTGGCACTGGGCTCCCGCAAGTAA

Translation (184 aa):
MAPLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKV
VTSSFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPR
RNMESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALALGSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH