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Report for CCDS59425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59425.1 Public Homo sapiens 19 RFPL4AL1 24 110 108 CCDS HistoryNCBI Gene:729974Re-query CCDS DB by CCDS ID:59425.1See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 59425.1
This CCDS representation lacks full-length human transcript support and it is therefore inferred. The full-length exon combination is inferred from the paralogous transcript CA454993.1.

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 59425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341750.5 ENSP00000345151.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341750.5Link to Ensembl Protein Viewer:ENSP00000345151.5Re-query CCDS DB by Nucleotide ID:ENST00000341750Re-query CCDS DB by Protein ID:ENSP00000345151
Original member Current member NCBI NM_001277397.2 NP_001264326.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001277397.2Link to Protein Sequence:NP_001264326.1Re-query CCDS DB by Nucleotide ID:NM_001277397Re-query CCDS DB by Protein ID:NP_001264326Link to BLAST:NP_001264326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264326.1 287 F8VTS6 287 100% 0 0

Chromosomal Locations for CCDS 59425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55771805 55772090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55772602 55773179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCTGAGCACTTCAAACAGATCATTAGATGTCCTGTCTGTCTAAAAGATCTTGAAGAAGCCGTGCAAC
TGAAATGTGGATATGCCTGCTGCCTCCAGTGCCTCAATTCACTCCAGAAGGAGCCCGATGGGGAAGGTTT
ACTGTGCCGTTTCTGCTCTGTGGTCTCTCAGAAGGATGACATCAAGCCCAAGTACAAGCTGAGGGCGCTG
GTTTCCATCATCAAGGAACTAGAGCCCAAGCTGAAATCTGTTCTAACAATGAACCCAAGGATGAGGAAGT
TTCAAGTGGATATGACCTTCGATGTGGACACAGCCAACAACTATCTCATCATTTCTGAAGACCTGAGGAG
TTTCCGAAGTGGGGATTTGAGCCAGAATAGGAAGGAGCAAGCTGAGAGGTTCGACACTGCCCTGTGCGTC
CTGGGCACCCCTCGCTTCACTTCCGGCCGCCATTACTGGGAGGTGGACGTGGGCACCAGCCAAGTGTGGG
ATGTGGGCGTGTGCAAGGAATCTGTCAACCGACAGGGGAAGATTGAGCTTTCTTCAGAACACGGCTTCTT
GACTGTGGGTTGCAGAGAAGGAAAGGTCTTTGCTGCCAGCACTGTGCCTATGACTCCTCTCTGGGTGAGT
CCCCAGTTGCACAGAGTGGGGATTTTCCTGGATGTAGGTATGAGGTCCATTGCCTTTTACAATGTTAGTG
ATGGGTGCCATATCAACACATTCATCGAGATTCCTGTTTGCGAGCCCTGGCGTCCATTTTTTGCTCATAA
ACGTGGAAGTCAAGATGATCAGAGCATCCTGAGTATCTGTTCTGTGATCAATCCATCCACTGCCAGTGCC
CCAGTTTCTTCTGAGGGAAAGTAA

Translation (287 aa):
MAEHFKQIIRCPVCLKDLEEAVQLKCGYACCLQCLNSLQKEPDGEGLLCRFCSVVSQKDDIKPKYKLRAL
VSIIKELEPKLKSVLTMNPRMRKFQVDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCV
LGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVS
PQLHRVGIFLDVGMRSIAFYNVSDGCHINTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSVINPSTASA
PVSSEGK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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