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Report for CCDS13828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13828.1 Public Homo sapiens 22 SNRPD3 24 110 108 CCDS HistoryNCBI Gene:6634Re-query CCDS DB by CCDS ID:13828.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215829.8 ENSP00000215829.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215829.8Link to Ensembl Protein Viewer:ENSP00000215829.3Re-query CCDS DB by Nucleotide ID:ENST00000215829Re-query CCDS DB by Protein ID:ENSP00000215829
Original member Current member EBI ENST00000404603.5 ENSP00000456090.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404603.5Link to Ensembl Protein Viewer:ENSP00000456090.1Re-query CCDS DB by Nucleotide ID:ENST00000404603Re-query CCDS DB by Protein ID:ENSP00000456090
Original member Current member EBI ENST00000652248.1 ENSP00000499210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652248.1Link to Ensembl Protein Viewer:ENSP00000499210.1Re-query CCDS DB by Nucleotide ID:ENST00000652248Re-query CCDS DB by Protein ID:ENSP00000499210
Original member Current member NCBI NM_001278656.2 NP_001265585.1 Accepted alive Link to Nucleotide Sequence:NM_001278656.2Link to Protein Sequence:NP_001265585.1Re-query CCDS DB by Nucleotide ID:NM_001278656Re-query CCDS DB by Protein ID:NP_001265585Link to BLAST:NP_001265585.1
Original member Current member NCBI NM_004175.5 NP_004166.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004175.5Link to Protein Sequence:NP_004166.1Re-query CCDS DB by Nucleotide ID:NM_004175Re-query CCDS DB by Protein ID:NP_004166Link to BLAST:NP_004166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265585.1 126 P62318-1 126 100% 0 0
NP_004166.1 126 P62318-1 126 100% 0 0

Chromosomal Locations for CCDS 13828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 24557675 24557800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24567984 24568176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 24571916 24571977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGTCTATTGGTGTGCCGATTAAAGTACTGCATGAGGCCGAGGGCCACATTGTGACATGTGAGACGAACA
CCGGTGAGGTATATCGGGGGAAGCTCATTGAAGCAGAGGACAACATGAACTGCCAGATGTCCAACATCAC
AGTCACATACAGAGATGGCCGAGTGGCACAGCTGGAGCAGGTATACATCCGTGGCAGCAAAATCCGCTTT
CTGATTTTGCCTGACATGCTGAAGAACGCACCCATGTTAAAGAGCATGAAAAATAAAAACCAAGGCTCAG
GGGCTGGCCGAGGAAAAGCTGCTATTCTCAAGGCCCAAGTGGCCGCAAGAGGAAGAGGACGTGGAATGGG
ACGTGGAAACATCTTTCAAAAGCGAAGATAA

Translation (126 aa):
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRF
LILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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