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Report for CCDS34436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34436.1 Public Homo sapiens 6 SNRPC 24 110 108 CCDS HistoryNCBI Gene:6631Re-query CCDS DB by CCDS ID:34436.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244520.10 ENSP00000244520.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244520.10Link to Ensembl Protein Viewer:ENSP00000244520.5Re-query CCDS DB by Nucleotide ID:ENST00000244520Re-query CCDS DB by Protein ID:ENSP00000244520
Original member Current member NCBI NM_003093.3 NP_003084.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003093.3Link to Protein Sequence:NP_003084.1Re-query CCDS DB by Nucleotide ID:NM_003093Re-query CCDS DB by Protein ID:NP_003084Link to BLAST:NP_003084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003084.1 159 P09234 159 100% 0 0

Chromosomal Locations for CCDS 34436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34757544 34757551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34757912 34757954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34762595 34762703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34767908 34767997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34770291 34770395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34773446 34773570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGCCCAAGTTTTATTGTGACTACTGCGATACATACCTCACCCATGACTCTCCATCTGTGAGAAAGACAC
ACTGCAGTGGAAGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCTCA
GAGCCTGATTGACAAAACAACGGCTGCATTTCAACAAGGAAAGATACCTCCTACTCCATTCTCTGCTCCT
CCTCCTGCAGGGGCGATGATACCACCTCCCCCCAGCCTTCCGGGTCCTCCTCGCCCTGGTATGATGCCAG
CACCCCATATGGGGGGCCCTCCCATGATGCCAATGATGGGCCCTCCTCCTCCTGGGATGATGCCAGTGGG
ACCTGCTCCTGGAATGAGGCCGCCCATGGGAGGCCATATGCCAATGATGCCTGGGCCCCCAATGATGAGA
CCTCCTGCCCGTCCCATGATGGTGCCCACTCGGCCCGGAATGACTCGACCAGACAGATAA

Translation (159 aa):
MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAP
PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR
PPARPMMVPTRPGMTRPDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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