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Report for CCDS94116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94116.1 Public Homo sapiens 7 SPDYE9 24 110 108 CCDS HistoryNCBI Gene:643909Re-query CCDS DB by CCDS ID:94116.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000575125.6 ENSP00000498945.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000575125.6Link to Ensembl Protein Viewer:ENSP00000498945.1Re-query CCDS DB by Nucleotide ID:ENST00000575125Re-query CCDS DB by Protein ID:ENSP00000498945
Original member Current member NCBI NM_001382554.3 NP_001369483.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382554.3Link to Protein Sequence:NP_001369483.1Re-query CCDS DB by Nucleotide ID:NM_001382554Re-query CCDS DB by Protein ID:NP_001369483Link to BLAST:NP_001369483.1

Chromosomal Locations for CCDS 94116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 73078352 73078411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73078534 73078777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73080483 73080568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73081796 73081854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73082888 73083106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 73084109 73084238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGGACAGATTTTGGGAAAGATCATGATGAGCCATCAACCGCAGCCCCAGGAAGAGCGGAGCCCCCAGC
GGAGCACCTCAGGGTACCCCCTCCAGGAGGTGGTGGATGATGAAGTGTCGGGACCATCAGCCCCTGGGGT
AGATCCCAGCCCCCCACGTAGGTCCCTTGGCTGGAAAAGGAAGAGGGAATGTTTGGATGAATCTGATGAT
GAGCCAGAGAAGGAGCTCGCCCCTGAGCCTGAGGAGACCTGGGTGGCGGAGACGCTGTGTGGCCTCAAGA
TGAAGGCGAAGCGACGGCGAGTGTCGCTCGTGCTCCCTGAGTACTACGAGGCCTTCAACAGGCTGCTTGA
GGATCCTGTCATTAAAAGACTCCTGGCCTGGGACAAAGATCTGAGGGTGTCGGACAAGTATCTCCTGGCT
ATGGTCATAGCGTATTTCAGCCGGGCCGGCCTCCCCTCCTGGCAATACCAACGCATTCATTTCTTCCTGG
CTCTCTATCTGGCCAATGACATGGAGGAGGACGACGAGGCCCCCAAACAAAACATCTTCTACTTCCTGTA
CGAGGAGACCCGCTCTCATATACCCTTGCTCAGTGAGCTTTGGTTCCAGTTATGCCGTTACATGAACCCG
AGGGCCAGGAAGAACTGCTCTCAGATAGCCTTGTTCCGGAAGTATCGGTTCCACTTCTTTTGTTCCATGC
GCTGCAGGGCTTGGGTTTCCCTGGAGGAGTTGGAAGAGATCCAGGCTTATGACCCAGAGCACTGGGTGTG
GGCGCGAGATCGCGCCCACCTTTCCTAG

Translation (265 aa):
MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDD
EPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLA
MVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNP
RARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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