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Report for CCDS333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
333.1 Public Homo sapiens 1 SRSF4 24 110 108 CCDS HistoryNCBI Gene:6429Re-query CCDS DB by CCDS ID:333.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373795.7 ENSP00000362900.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373795.7Link to Ensembl Protein Viewer:ENSP00000362900.4Re-query CCDS DB by Nucleotide ID:ENST00000373795Re-query CCDS DB by Protein ID:ENSP00000362900
Original member Current member NCBI NM_005626.5 NP_005617.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005626.5Link to Protein Sequence:NP_005617.2Re-query CCDS DB by Nucleotide ID:NM_005626Re-query CCDS DB by Protein ID:NP_005617Link to BLAST:NP_005617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005617.2 494 Q08170 494 100% 0 0

Chromosomal Locations for CCDS 333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 29148410 29149226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 29150103 29150192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 29154696 29154910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 29159374 29159486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 29160375 29160517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 29181646 29181752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGCCGCGGGTGTACATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATGTGGAGCGCTTCTTTAAGG
GCTACGGGAAGATCCTGGAGGTGGATCTGAAGAACGGATATGGTTTTGTGGAGTTTGATGATCTGCGTGA
TGCAGATGATGCTGTTTATGAACTGAATGGCAAAGACCTTTGTGGTGAGCGAGTAATTGTTGAGCATGCC
CGCGGCCCACGGCGAGATGGCAGTTACGGTTCTGGACGCAGTGGATATGGTTATAGAAGAAGTGGCCGAG
ATAAATATGGCCCTCCTACTCGCACAGAGTACAGACTTATTGTGGAGAATTTGTCAAGTCGGTGCAGCTG
GCAAGACCTAAAGGATTATATGCGTCAGGCAGGAGAAGTGACTTATGCAGATGCTCACAAGGGACGCAAA
AATGAAGGGGTGATTGAATTTGTATCTTATTCTGATATGAAAAGAGCTTTGGAAAAGTTGGATGGAACTG
AAGTCAATGGGAGAAAAATCAGATTAGTTGAAGACAAGCCAGGTTCCAGACGACGCCGGTCCTACTCCAG
AAGCCGGAGTCATTCAAGGTCTCGCTCTCGAAGCAGACATTCCCGTAAGAGCAGAAGCCGAAGTGGCAGC
AGCAAAAGCAGTCATTCTAAGAGTAGATCTCGGTCCAGGTCGGGCTCCCGCTCCCGGAGCAAGAGCCGGA
GCCGGAGCCAGAGTCGGAGCCGGAGCAAGAAAGAGAAAAGCAGGAGCCCCAGCAAGGAAAAGAGCCGCAG
CCGCAGCCATAGCGCTGGCAAGAGCCGCAGCAAGAGCAAAGACCAAGCTGAAGAGAAGATCCAAAACAAT
GACAATGTCGGGAAACCCAAGAGCCGGAGTCCTAGCAGGCATAAAAGTAAGAGCAAAAGTCGGAGCAGGA
GTCAGGAGAGGAGAGTGGAGGAGGAGAAGCGAGGGAGTGTGAGCAGGGGCAGGAGCCAGGAGAAGAGCCT
CCGCCAGAGTCGGAGCCGGAGCAGGAGCAAAGGGGGCAGCAGGAGCCGGAGCAGGAGCCGCAGCAAGAGC
AAGGACAAGAGGAAGGGCAGGAAGAGAAGCAGAGAGGAGAGCCGCAGTCGCAGTCGCAGCCGCAGCAAGA
GTGAGAGGAGCAGAAAGCGAGGCAGCAAGCGAGACAGCAAGGCGGGCAGCAGCAAGAAGAAGAAGAAGGA
AGACACTGACCGCTCCCAGTCCAGATCTCCATCCCGCTCCGTGTCAAAGGAGCGGGAACATGCCAAGTCT
GAATCCAGCCAGAGGGAAGGTCGAGGAGAGAGTGAGAATGCTGGCACCAATCAGGAGACCCGGTCCAGGT
CGAGATCCAATTCCAAATCGAAACCAAACCTTCCATCAGAATCACGCTCCAGATCAAAGTCAGCTTCAAA
AACCCGATCTCGGTCCAAGTCTAGATCCAGGTCTGCTTCCAGATCGCCCTCCCGATCTAGATCTAGGTCC
CACTCAAGGTCCTAA

Translation (494 aa):
MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA
RGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK
NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS
SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNN
DNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS
KDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKS
ESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS
HSRS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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