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Report for CCDS8528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8528.1 Public Homo sapiens 12 FERRY3 24 110 108 CCDS HistoryNCBI Gene:57102Re-query CCDS DB by CCDS ID:8528.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261250.8 ENSP00000261250.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261250.8Link to Ensembl Protein Viewer:ENSP00000261250.3Re-query CCDS DB by Nucleotide ID:ENST00000261250Re-query CCDS DB by Protein ID:ENSP00000261250
Original member Current member EBI ENST00000545746.5 ENSP00000439996.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545746.5Link to Ensembl Protein Viewer:ENSP00000439996.1Re-query CCDS DB by Nucleotide ID:ENST00000545746Re-query CCDS DB by Protein ID:ENSP00000439996
Original member Current member NCBI NM_001304811.2 NP_001291740.1 Accepted alive Link to Nucleotide Sequence:NM_001304811.2Link to Protein Sequence:NP_001291740.1Re-query CCDS DB by Nucleotide ID:NM_001304811Re-query CCDS DB by Protein ID:NP_001291740Link to BLAST:NP_001291740.1
Original member Current member NCBI NM_020374.4 NP_065107.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020374.4Link to Protein Sequence:NP_065107.1Re-query CCDS DB by Nucleotide ID:NM_020374Re-query CCDS DB by Protein ID:NP_065107Link to BLAST:NP_065107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291740.1 552 Q9NQ89 552 100% 0 0
NP_065107.1 552 Q9NQ89 552 100% 0 0

Chromosomal Locations for CCDS 8528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4489807 4489899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4490522 4490589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4491177 4491234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4500138 4500340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4505306 4505380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4517061 4517189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4518058 4518255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4518774 4518880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4525254 4525375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4525484 4525583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4529869 4530050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4534157 4534302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4536017 4536194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGAAGAAAAACAGAGAAAGATTCTGCAATAGAGAGAGAGAATTTGTATATAAATTTAAAGTAGGAAGTC
AGTGCTTAGAACTGAGAGTGCCACTCAAATTTCCTGTTCAAGAGAATGCCAGTCATTTGCATGGACGTCT
GATGCTGCTGCACAGTTTACCGTGCTTTATAGAAAAAGACTTAAAAGAAGCTCTGACTCAGTTTATAGAA
GAAGAATCCCTCAGCGATTATGATAGAGATGCTGAAGCATCCCTGGCAGCTGTGAAATCAGGTGAAGTAG
ATTTACATCAGCTGGCGAGTACATGGGCCAAAGCTTATGCTGAGACCACGTTAGAGCATGCAAGGCCTGA
AGAACCCAGCTGGGATGAAGATTTTGCAGATGTGTACCATGACTTAATTCATTCTCCTGCCTCTGAAACT
CTCTTAAATTTGGAACATAATTACTTTGTTAGTATCTCAGAACTGATTGGTGAAAGAGATGTGGAGCTGA
AAAAATTACGAGAGAGACAAGGTATTGAAATGGAAAAAGTCATGCAGGAATTGGGAAAATCACTGACAGA
TCAAGATGTAAATTCACTGGCTGCTCAGCATTTTGAATCCCAGCAAGACCTAGAAAATAAATGGTCGAAT
GAATTAAAACAATCAACTGCCATCCAAAAACAAGAGTATCAAGAATGGGTAATAAAACTTCACCAAGACC
TAAAAAACCCCAACAACAGCTCCCTTAGTGAGGAAATTAAAGTTCAGCCAAGTCAGTTCAGAGAATCTGT
AGAAGCAATTGGAAGGATTTATGAGGAACAGAGAAAGTTAGAAGAAAGTTTTACCATTCACTTAGGAGCC
CAGTTGAAGACCATGCATAATTTGAGATTGCTGAGAGCAGATATGCTGGACTTCTGTAAGCATAAAAGAA
ATCATCGAAGTGGTGTGAAACTTCATCGGCTCCAAACAGCTCTGTCACTTTATTCTACATCTCTCTGTGG
CCTGGTTTTACTAGTAGATAATCGAATTAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGC
CAAGAATGCACTGACTTCCATTTCCCCCGAATTGAAGAGCAATTAGAAGTTGTCCAACAGGTGGTACTTT
ATGCTAGAACCCAGCGCAGGAGTAAATTGAAAGAATCACTTGATTCTGGAAACCAAAATGGAGGAAATGA
TGATAAGACTAAGAATGCTGAGAGGAACTATTTAAATGTTTTACCTGGGGAATTTTATATTACACGGCAT
TCTAATCTCTCAGAAATCCATGTTGCTTTCCATCTCTGTGTGGATGACCATGTGAAATCGGGAAACATCA
CTGCTCGTGATCCTGCCATTATGGGACTCCGAAATATACTCAAAGTTTGCTGTACCCATGACATCACAAC
AATAAGCATTCCTCTCTTGCTGGTACATGATATGTCAGAGGAAATGACTATACCCTGGTGCTTAAGGAGA
GCGGAACTTGTGTTCAAGTGTGTCAAAGGTTTCATGATGGAAATGGCTTCATGGGATGGAGGAATTTCTA
GGACAGTGCAATTTCTAGTACCACAGAGTATTTCTGAAGAAATGTTTTATCAACTTAGTAACATGCTTCC
CCAGATCTTCCGAGTATCATCAACACTCACTCTGACATCCAAGCACTAA

Translation (552 aa):
MKKNRERFCNREREFVYKFKVGSQCLELRVPLKFPVQENASHLHGRLMLLHSLPCFIEKDLKEALTQFIE
EESLSDYDRDAEASLAAVKSGEVDLHQLASTWAKAYAETTLEHARPEEPSWDEDFADVYHDLIHSPASET
LLNLEHNYFVSISELIGERDVELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSN
ELKQSTAIQKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESVEAIGRIYEEQRKLEESFTIHLGA
QLKTMHNLRLLRADMLDFCKHKRNHRSGVKLHRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVC
QECTDFHFPRIEEQLEVVQQVVLYARTQRRSKLKESLDSGNQNGGNDDKTKNAERNYLNVLPGEFYITRH
SNLSEIHVAFHLCVDDHVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRR
AELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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