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Report for CCDS47289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47289.1 Public Homo sapiens 5 PCDHGA2 24 110 108 CCDS HistoryNCBI Gene:56113Re-query CCDS DB by CCDS ID:47289.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47289.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394576.3 ENSP00000378077.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394576.3Link to Ensembl Protein Viewer:ENSP00000378077.2Re-query CCDS DB by Nucleotide ID:ENST00000394576Re-query CCDS DB by Protein ID:ENSP00000378077
Original member Current member NCBI NM_018915.4 NP_061738.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018915.4Link to Protein Sequence:NP_061738.1Re-query CCDS DB by Nucleotide ID:NM_018915Re-query CCDS DB by Protein ID:NP_061738Link to BLAST:NP_061738.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061738.1 932 Q9Y5H1-1 932 100% 0 0

Chromosomal Locations for CCDS 47289.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141338972 141341395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCGGCTCTGCAAAAGTTGCCACACTGCAGAAAGCTGGTCCTGCTGTGCTTCCTTTTGGCGACCCTGT
GGGAGGCCAGGGCCGGGCAGATTCGCTATTCTGTGCGGGAAGAGATCGACAGAGGCTCCTTCGTAGGCAA
CATCGCCAAGGACTTGGGTTTGGAGCCCCTGGCACTGGCAGAGCAGGGAGTCCGCATCGTCTCCAGAGGT
AGGTCCCAGCTCTTTGCTCTGAACCCGCGAAGCGGCAGCTTGGTCACTGCGAACAGGATAGACCGGGAGG
AGCTCTGCGCTCAGAGCGCACCCTGTCTGTTGAATTTTAACATTCTGCTGGAGGATAAATTGACTATTTA
TTCAGTAGAGGTGGAAATAACAGATATTAACGATAATGCCCCTCGCTTTGGAGTAGAGGAACTGGAGCTA
AAAATCAGTGAAACCACTACGCCAGGATTCCGGATTCCTCTTAAGAATGCGCATGATGCAGACGTAGGTG
AGAACGCCCTTCAGAAGTACGCACTCAACCCAAATGACCACTTCTCCCTGGACGTGCGAAGGGGAGCTGA
TGGGAACAAGTACCCAGAACTGGTGCTGGAGCGCTCTCTGGACCGCGAGGAAGAGGCTGTTCACCACCTC
GTTCTCGTGGCTTCTGATGGGGGTGACCCAGTGCTATCTGGCACCTCCCGCATCTGCGTGAAGGTCCTGG
ATGCGAACGACAATGCGCCTGTTTTTACACAGCCCGAGTACCGCATAAGCATTCCGGAGAATACGCTCGT
GGGCACCCGGATACTCACGGTGACCGCCACTGACGCAGATGAGGGCTACTACGCTCAAGTGGTATATTTT
CTAGAGAAAAGCCCTGGAGAAACCTCAGAGGTATTTGAGCTTAAGTCAACATCTGGAGAACTGACAATCA
TAAAAGATCTAGATTATGAGGATGCTACATTCCATGAAATTGATATTGAAGCTCAGGATGGTCCGGGCCT
TCTAACCAGAGCGAAGGTTATCGTCACGGTTCTGGATGTGAATGACAATGCCCCAGAATTTTACATGACA
TCTGCTACTAGCTCAGTTTCTGAAGACTCTCTTCCAGGAACCATAATTGGGCTTTTTAATGTACATGATA
GAGACTCTGGGCAGAACGCATTCACCACCTGTTCACTCCCCGAGGATCTTCCTTTTAAGTTAGAAAAGTC
AGTAGACAATTACTACCGACTGGTTACAACCAGAGCCCTTGACAGGGAACAGTTTTCCTTTTACAACATC
ACTCTAACCGCTAAAGATGGAGGGAACCCCTCCCTGTCCACGGATGCTCACATTTTGCTCCAGGTGGCAG
ACATCAACGACAACGCACCCGCCTTCTCCCGCACATCCTACTCCACCTACATTCCCGAAAACAACCCCAG
AGGAGCCTCTGTCTTCTCAGTGACGGCCCATGACCCCGACAGCAACGACAATGCTCATGTAACTTACTCT
TTCGCGGAGGACACTGTTCAGGGGGCACCCTTATCCTCTTACATCTCTATCAACTCCGACACTGGAGTAC
TCTATGCACTGCGCTCCTTTGATTATGAGCAGTTGCGAGACTTGCAAGTGTGGGTGATAGCGCGGGACAG
CGGGAACCCTCCACTCAGTAGCAATGTATCATTAAGCCTGTTCGTGCTGGACCAGAACGACAACGCGCCC
GAGATCCTGTACCCTGCCTTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCTTACCA
CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTGGCCATCCAGGACCACGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCCCCGACATCCTGGCCGACCTGGGCAG
CCTCGAGCCCTCCGCCATACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGTGGCCGCGGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGTTGCTGGCGCACAGGCTGCGGCGCTGGCACAAGTCACGCC
TGCTGCAGGCTTCAGGAGGCAGCTTGACAGGCATGCAGAGCTCGCACTTTGTGGGCGTGGACGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACTGCGGACTCGCGGAAGAGCCACCTGATTTTC
CCCCAGCCCAACTATGCGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAAGGATTTTTTATCAGCGC
CTCAATCTCTACTCGAAGAAGAAAGAGAAGAAACGTTTTCTCAGCAAGCCCCGCCCAACACGGACTGGCG
TTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC
AACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT
CCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA
CGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
CGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (932 aa):
MAALQKLPHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRG
RSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELEL
KISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPELVLERSLDREEEAVHHL
VLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATDADEGYYAQVVYF
LEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMT
SATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNI
TLTAKDGGNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYS
FAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAP
EILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAIPNDSDLTLYLVVAVAAV
SCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLISQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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