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Report for CCDS14497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14497.1 Public Homo sapiens X NXF2 24 110 108 CCDS HistoryNCBI Gene:56001Re-query CCDS DB by CCDS ID:14497.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000604790.2 ENSP00000474598.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000604790.2Link to Ensembl Protein Viewer:ENSP00000474598.2Re-query CCDS DB by Nucleotide ID:ENST00000604790Re-query CCDS DB by Protein ID:ENSP00000474598
Original member Current member EBI ENST00000625106.4 ENSP00000485586.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000625106.4Link to Ensembl Protein Viewer:ENSP00000485586.2Re-query CCDS DB by Nucleotide ID:ENST00000625106Re-query CCDS DB by Protein ID:ENSP00000485586
Original member Current member NCBI NM_022053.4 NP_071336.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022053.4Link to Protein Sequence:NP_071336.1Re-query CCDS DB by Nucleotide ID:NM_022053Re-query CCDS DB by Protein ID:NP_071336Link to BLAST:NP_071336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071336.1 626 Q9GZY0 626 100% 0 0

Chromosomal Locations for CCDS 14497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102307079 102307121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102316963 102317152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102317379 102317529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102317833 102317916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102318028 102318132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102318248 102318328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102318515 102318584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102318741 102318829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102318950 102319057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102319237 102319346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102321025 102321061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102321442 102321510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102321597 102321652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102321784 102321891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102322012 102322070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102322209 102322324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102322420 102322462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102323063 102323135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102323670 102323852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102326263 102326323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102326470 102326514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGTGCTCTACTCTAAAGAAGTGTGGGACATACAGAACTGAAGTTGCAGAATGCCATGACCATGGTAGCA
CTTTTCAAGGAAGAAAGAAAGGTGGGAGTTCTTTCCGGGATAATTTTGACAAGAGGAGCTGTCATTATGA
ACATGGTGGGTATGAGCGCCCGCCTTCACACTGCCAGGAGAATGATGGAAGCGTGGAGATGAGGGATGTC
CACAAGGACCAACAACTAAGACACACTCCTTATAGCATCCGATGCGAAAGAAGAATGAAATGGCATAGTG
AAGACGAAATCCGTATTACCACGTGGAGAAATAGAAAACCTCCGGAGAGAAAAATGAGTCAGAACACACA
GGATGGATACACAAGGAACTGGTTTAAGGTCACAATTCCTTACGGGATAAAGTATGACAAGGCATGGCTA
ATGAATTCAATCCAGAGCCATTGCAGTGACCGCTTCACTCCGGTTGATTTCCACTACGTCCGAAATCGGG
CATGCTTCTTTGTCCAGGATGCTAGCGCTGCCTCCGCATTGAAGGATGTCAGTTATAAGATTTATGATGA
TGAGAACCAAAAGATATGTATATTTGTCAATCATTCTACTGCGCCCTACTCTGTGAAGAATAAGTTGAAG
CCAGGCCAAATGGAGATGCTAAAGCTGACCATGAACAAACGGTACAATGTCTCCCAGCAAGCTCTTGATC
TCCAGAATCTCCGCTTTGACCCAGACTTGATGGGCCGTGACATTGATATAATCCTGAATCGAAGAAACTG
CATGGCTGCCACCCTGAAGATCATTGAAAGAAATTTCCCTGAGCTGTTGTCTTTGAACTTGTGCAACAAC
AAGCTGTACCAGCTGGATGGCCTTTCTGACATTACAGAGAAGGCTCCCAAAGTCAAGACCCTGAATCTCT
CCAAAAATAAGCTGGAGTCGGCGTGGGAGTTGGGCAAGGTGAAAGGGCTGAAGCTCGAAGAGCTATGGCT
AGAAGGGAACCCGTTGTGCAGCACCTTCTCGGACCAGTCCGCCTATGTAAGTGCCATCCGGGATTGTTTC
CCCAAGTTGTTACGCCTGGACGGCCGAGAGTTATCCGCACCAGTGATTGTTGACATTGACAGCTCTGAGA
CAATGAAACCCTGCAAGGAAAACTTTACTGGATCTGAGACCCTAAAGCATTTAGTCCTGCAATTCCTGCA
GCAGTATTACTCGATCTATGACTCTGGAGATCGACAGGGTCTCCTCGGTGCTTACCACGATGAGGCCTGC
TTCTCCTTGGCTATTCCCTTCGACCCCAAGGACTCAGCCCCGAGCAGCTTGTGCAAGTACTTTGAGGATA
GCAGGAATATGAAAACACTCAAGGACCCCTACCTGAAGGGGGAACTGCTGAGGCGCACAAAACGTGACAT
TGTGGACTCCCTCAGTGCGTTGCCCAAAACTCAGCATGACCTCAGCTCCATCCTGGTGGACGTGTGGTGC
CAGACGGAAAGGATGCTCTGCTTTTCTGTCAATGGGGTTTTCAAGGAAGTGGAAGGACAGTCTCAGGGTT
CTGTTCTCGCCTTCACCCGGACCTTCATTGCTACCCCTGGCAGCAGTTCCAGTCTGTGCATCGTGAATGA
CGAGCTGTTTGTGAGGGATGCCAGCCCCCAAGAGACTCAGAGTGCCTTCTCCATCCCAGTGTCCACACTC
TCCTCCAGCTCTGAGCCCTCCCTCTCCCAGGAGCAGCAGGAAATGGTGCAGGCTTTCTCTGCCCAGTCTG
GGATGAAACTGGAGTGGTCTCAGAAGTGCCTTCAGGACAATGAGTGGAACTACACTAGAGCTGGCCAGGC
CTTCACTATGCTCCAGACCGAGGGCAAGATCCCCGCGGAGGCCTTCAAGCAAATCTCCTAA

Translation (626 aa):
MCSTLKKCGTYRTEVAECHDHGSTFQGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDV
HKDQQLRHTPYSIRCERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWL
MNSIQSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYSVKNKLK
PGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKIIERNFPELLSLNLCNN
KLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCF
PKLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEAC
FSLAIPFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWC
QTERMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTL
SSSSEPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAFKQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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