NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30985.1 Public Homo sapiens 1 KLHDC8A 24 110 108 CCDS HistoryNCBI Gene:55220Re-query CCDS DB by CCDS ID:30985.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367155.8 ENSP00000356123.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367155.8Link to Ensembl Protein Viewer:ENSP00000356123.3Re-query CCDS DB by Nucleotide ID:ENST00000367155Re-query CCDS DB by Protein ID:ENSP00000356123
Original member Current member EBI ENST00000367156.7 ENSP00000356124.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367156.7Link to Ensembl Protein Viewer:ENSP00000356124.3Re-query CCDS DB by Nucleotide ID:ENST00000367156Re-query CCDS DB by Protein ID:ENSP00000356124
Original member Current member EBI ENST00000539253.5 ENSP00000442229.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539253.5Link to Ensembl Protein Viewer:ENSP00000442229.1Re-query CCDS DB by Nucleotide ID:ENST00000539253Re-query CCDS DB by Protein ID:ENSP00000442229
Original member Current member NCBI NM_001271863.2 NP_001258792.1 Accepted alive Link to Nucleotide Sequence:NM_001271863.2Link to Protein Sequence:NP_001258792.1Re-query CCDS DB by Nucleotide ID:NM_001271863Re-query CCDS DB by Protein ID:NP_001258792Link to BLAST:NP_001258792.1
Original member Current member NCBI NM_001271864.2 NP_001258793.1 Accepted alive Link to Nucleotide Sequence:NM_001271864.2Link to Protein Sequence:NP_001258793.1Re-query CCDS DB by Nucleotide ID:NM_001271864Re-query CCDS DB by Protein ID:NP_001258793Link to BLAST:NP_001258793.1
Original member Current member NCBI NM_001271865.2 NP_001258794.1 Accepted alive Link to Nucleotide Sequence:NM_001271865.2Link to Protein Sequence:NP_001258794.1Re-query CCDS DB by Nucleotide ID:NM_001271865Re-query CCDS DB by Protein ID:NP_001258794Link to BLAST:NP_001258794.1
Original member Current member NCBI NM_018203.3 NP_060673.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018203.3Link to Protein Sequence:NP_060673.1Re-query CCDS DB by Nucleotide ID:NM_018203Re-query CCDS DB by Protein ID:NP_060673Link to BLAST:NP_060673.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258792.1 350 Q8IYD2 350 100% 0 0
NP_001258793.1 350 Q8IYD2 350 100% 0 0
NP_001258794.1 350 Q8IYD2 350 100% 0 0
NP_060673.1 350 Q8IYD2 350 100% 0 0

Chromosomal Locations for CCDS 30985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205337399 205337592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205338495 205338596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205339194 205339409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205339644 205339808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205343229 205343604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGAGGTGCCTAACGTCAAGGACTTCCAGTGGAAGCGCCTGGCGCCACTGCCCAGCCGCCGGGTCTACT
GCTCCCTGCTGGAGACCGGGGGCCAGGTCTATGCCATCGGGGGATGTGACGACAACGGCGTCCCCATGGA
CTGCTTCGAGGTCTACTCCCCGGAGGCCGACCAGTGGACCGCCTTGCCCCGGCTGCCCACAGCCCGGGCG
GGGGTGGCCGTCACCGCCCTGGGGAAGCGGATCATGGTGATTGGGGGCGTGGGCACCAATCAGCTGCCCC
TGAAGGTCGTGGAGATGTACAACATCGATGAGGGCAAGTGGAAGAAGAGGAGCATGCTGCGTGAGGCCGC
CATGGGCATTTCTGTCACGGCCAAAGATTACCGAGTATATGCGGCAGGCGGGATGGGCCTGGACCTACGT
CCACACAACCACCTCCAACACTATGACATGCTGAAGGACATGTGGGTGTCCCTAGCACCCATGCCCACCC
CGAGATATGCTGCCACCTCCTTCCTCCGAGGCTCCAAGATCTACGTGCTGGGGGGACGACAGTCCAAGTA
CGCGGTCAACGCTTTCGAGGTCTTTGACATCGAGACTCGCTCCTGGACCAAGTTTCCCAACATTCCCTAT
AAGCGGGCCTTCTCCAGCTTTGTGACCCTGGACAACCACTTGTACAGCCTAGGAGGCCTGCGGCAAGGTC
GCCTCTACCGGCAGCCCAAGTTCCTGCGGACGATGGACGTGTTCGACATGGAACAGGGGGGATGGCTGAA
GATGGAACGATCGTTCTTCCTCAAGAAGCGGCGGGCAGATTTTGTGGCTGGCTCTCTGAGTGGACGGGTC
ATAGTGGCTGGGGGACTTGGGAATCAACCCACTGTCCTGGAGACGGCGGAAGCATTCCACCCAGGGAAGA
ACAAATGGGAGATCCTCCCTGCCATGCCCACACCCCGCTGTGCCTGCTCCAGCATAGTCGTCAAGAACTG
CCTCCTCGCCGTGGGAGGTGTCAACCAGGGTCTGAGTGACGCAGTGGAGGCCCTGTGTGTCTCTGACTCC
TAG

Translation (350 aa):
MEVPNVKDFQWKRLAPLPSRRVYCSLLETGGQVYAIGGCDDNGVPMDCFEVYSPEADQWTALPRLPTARA
GVAVTALGKRIMVIGGVGTNQLPLKVVEMYNIDEGKWKKRSMLREAAMGISVTAKDYRVYAAGGMGLDLR
PHNHLQHYDMLKDMWVSLAPMPTPRYAATSFLRGSKIYVLGGRQSKYAVNAFEVFDIETRSWTKFPNIPY
KRAFSSFVTLDNHLYSLGGLRQGRLYRQPKFLRTMDVFDMEQGGWLKMERSFFLKKRRADFVAGSLSGRV
IVAGGLGNQPTVLETAEAFHPGKNKWEILPAMPTPRCACSSIVVKNCLLAVGGVNQGLSDAVEALCVSDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH