NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11989.1 Public Homo sapiens 18 SERPINB2 24 110 108 CCDS HistoryNCBI Gene:5055Re-query CCDS DB by CCDS ID:11989.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11989.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299502.9 ENSP00000299502.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299502.9Link to Ensembl Protein Viewer:ENSP00000299502.4Re-query CCDS DB by Nucleotide ID:ENST00000299502Re-query CCDS DB by Protein ID:ENSP00000299502
Original member Current member EBI ENST00000457692.5 ENSP00000401645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457692.5Link to Ensembl Protein Viewer:ENSP00000401645.1Re-query CCDS DB by Nucleotide ID:ENST00000457692Re-query CCDS DB by Protein ID:ENSP00000401645
Original member Current member NCBI NM_001143818.2 NP_001137290.1 Accepted alive Link to Nucleotide Sequence:NM_001143818.2Link to Protein Sequence:NP_001137290.1Re-query CCDS DB by Nucleotide ID:NM_001143818Re-query CCDS DB by Protein ID:NP_001137290Link to BLAST:NP_001137290.1
Original member Current member NCBI NM_002575.3 NP_002566.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002575.3Link to Protein Sequence:NP_002566.1Re-query CCDS DB by Nucleotide ID:NM_002575Re-query CCDS DB by Protein ID:NP_002566Link to BLAST:NP_002566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137290.1 415 P05120 415 100% 0 0
NP_002566.1 415 P05120 415 100% 0 0

Chromosomal Locations for CCDS 11989.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63891445 63891612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63895264 63895383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63897091 63897219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63897727 63897844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63901740 63901882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63902404 63902568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63902901 63903305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGAGGATCTTTGTGTGGCAAACACACTCTTTGCCCTCAATTTATTCAAGCATCTGGCAAAAGCAAGCC
CCACCCAGAACCTCTTCCTCTCCCCATGGAGCATCTCGTCCACCATGGCCATGGTCTACATGGGCTCCAG
GGGCAGCACCGAAGACCAGATGGCCAAGGTGCTTCAGTTTAATGAAGTGGGAGCCAATGCAGTTACCCCC
ATGACTCCAGAGAACTTTACCAGCTGTGGGTTCATGCAGCAGATCCAGAAGGGTAGTTATCCTGATGCGA
TTTTGCAGGCACAAGCTGCAGATAAAATCCATTCATCCTTCCGCTCTCTCAGCTCTGCAATCAATGCATC
CACAGGGAATTATTTACTGGAAAGTGTCAATAAGCTGTTTGGTGAGAAGTCTGCGAGCTTCCGGGAAGAA
TATATTCGACTCTGTCAGAAATATTACTCCTCAGAACCCCAGGCAGTAGACTTCCTAGAATGTGCAGAAG
AAGCTAGAAAAAAGATTAATTCCTGGGTCAAGACTCAAACCAAAGGCAAAATCCCAAACTTGTTACCTGA
AGGTTCTGTAGATGGGGATACCAGGATGGTCCTGGTGAATGCTGTCTACTTCAAAGGAAAGTGGAAAACT
CCATTTGAGAAGAAACTAAATGGGCTTTATCCTTTCCGTGTAAACTCGGCTCAGCGCACACCTGTACAGA
TGATGTACTTGCGTGAAAAGCTAAACATTGGATACATAGAAGACCTAAAGGCTCAGATTCTAGAACTCCC
ATATGCTGGAGATGTTAGCATGTTCTTGTTGCTTCCAGATGAAATTGCCGATGTGTCCACTGGCTTGGAG
CTGCTGGAAAGTGAAATAACCTATGACAAACTCAACAAGTGGACCAGCAAAGACAAAATGGCTGAAGATG
AAGTTGAGGTATACATACCCCAGTTCAAATTAGAAGAGCATTATGAACTCAGATCCATTCTGAGAAGCAT
GGGCATGGAGGACGCCTTCAACAAGGGACGGGCCAATTTCTCAGGGATGTCGGAGAGGAATGACCTGTTT
CTTTCTGAAGTGTTCCACCAAGCCATGGTGGATGTGAATGAGGAGGGCACTGAAGCAGCCGCTGGCACAG
GAGGTGTTATGACAGGGAGAACTGGACATGGAGGCCCACAGTTTGTGGCAGATCATCCTTTTCTTTTTCT
TATTATGCATAAGATAACCAACTGCATTTTATTTTTCGGCAGATTTTCCTCACCCTAA

Translation (415 aa):
MEDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGANAVTP
MTPENFTSCGFMQQIQKGSYPDAILQAQAADKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSASFREE
YIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDTRMVLVNAVYFKGKWKT
PFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIADVSTGLE
LLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLF
LSEVFHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH